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AT4G02350.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.500
cytosol 0.500
ASURE: cytosol,plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22215637 (2012): plasma membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : exocyst complex component sec15B
Curator
Summary (TAIR10)
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion.
Computational
Description (TAIR10)
exocyst complex component sec15B (SEC15B); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol, plasma membrane, membrane, exocyst; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Exocyst complex subunit Sec15-like (InterPro:IPR007225); BEST Arabidopsis thaliana protein match is: exocyst complex component sec15A (TAIR:AT3G56640.1); Has 431 Blast hits to 427 proteins in 173 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 138; Plants - 91; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioGrid:13351eggNOG:ENOG410XQAEeggNOG:KOG2176EMBL:AF069298EMBL:AL161494EMBL:CP002687EnsemblPlants:AT4G02350
EnsemblPlants:AT4G02350.1entrez:828060GeneID:828060Genevisible:F4JHH5GO:GO:0000145GO:GO:0005576GO:GO:0005618
GO:GO:0005829GO:GO:0005856GO:GO:0006904GO:GO:0009524Gramene:AT4G02350.1hmmpanther:PTHR12702hmmpanther:PTHR12702:SF1
InParanoid:F4JHH5IntAct:F4JHH5InterPro:IPR007225iPTMnet:F4JHH5KEGG:ath:AT4G02350KO:K19985ncoils:Coil
OMA:AVMERACPANTHER:PTHR12702PaxDb:F4JHH5Pfam:F4JHH5Pfam:PF04091PIR:T01315PIRSF:PIRSF025007
PRIDE:F4JHH5PRO:PR:F4JHH5ProteinModelPortal:F4JHH5Proteomes:UP000006548Reactome:R-ATH-5620916RefSeq:NP_567229.2SMR:F4JHH5
STRING:3702.AT4G02350.1TAIR:AT4G02350tair10-symbols:SEC15BUniGene:At.34308UniProt:F4JHH5
Coordinates (TAIR10) chr4:+:1038157..1040571
Molecular Weight (calculated) 88376.00 Da
IEP (calculated) 6.39
GRAVY (calculated) -0.23
Length 787 amino acids
Sequence (TAIR10)
(BLAST)
001: MQSSKGRRKV GSTTAGAGID SAEKLDELLI SSAICNGEDL GPFVRKTFGT GKPETLLHHL KFFARSKESE IEEVCKAHYQ DFIHAVDDLK SLLSDVESLK
101: SALSDSNSKL QSVAAPLLSS LDSLVEAQTV SKNVDLAIGA VTHCVRVMEL VSRANQHLQS GNFYMALKCV DSIESDFMEK TPSSTLKRML ENRIPAIRSY
201: VERKVNKEFG DWLVEIRVVS RNLGQLAIGE ASAARQREEE LRIKQRQAEE QSRLSLRDCV YALNEEEDDE FGSGHEGSDG GSSGGGLLGF DLTPLYRAYH
301: IHQTLSLGDT FKQYYYNNRD LQLTSDFQIA GFFIVEDRVL RTGGGLISKL EVETLWDTAV TKMCAVLEDQ FSRMQTANHL LLIKDYVSLL GVSLRRYGYA
401: VDSLLEVLSK HRDKYHELLL SDCRKQITEA LSADKFEQML MKKEYEYSMN VLSFQLQTSE IVPAFPFIAP FSTTVPDCCR IVRSFIEDSV SFMSHGGQLD
501: FYDVVKKYLD RLLGEVLDEA LLKLISTSVH GVSQAMQVAA NMAVFERACD FFFRHAAHLS GVPLRMAERG RRHFPLTKSQ NTAEDTLSGM LKKKIDGFMT
601: LLENVNWTSD DIPQGGNEYM NEVLIYLETL VSTAQQILPA KVLKRVLRDV LAHISEKIVG TLCGDLVKRL SMAAIKGLDV DIQLLDSFTE NLTPLLTDKE
701: AREMKKAFVE IRQMINLLLS SHPENFVNPV IRERSYNALD YRKVATVSEK FRDPSDSIFG TFGTRGSRQN PKNKSLDALI KRLKDVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)