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AT4G02270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28138059 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root hair specific 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
root hair specific 13 (RHS13); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root hair, root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT2G47540.1); Has 108 Blast hits to 108 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 108; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J17DeggNOG:ENOG410XS0CEMBL:AF075597EMBL:AK227972EMBL:AL161494EMBL:BT006378EMBL:CP002687
EnsemblPlants:AT4G02270EnsemblPlants:AT4G02270.1entrez:828083GeneID:828083Gramene:AT4G02270.1hmmpanther:PTHR33470hmmpanther:PTHR33470:SF1
HOGENOM:HOG000090463KEGG:ath:AT4G02270OMA:RTVTKCKPfam:PF01190PhylomeDB:O81417PIR:T01421Proteomes:UP000006548
RefSeq:NP_192136.1STRING:3702.AT4G02270.1TAIR:AT4G02270tair10-symbols:RHS13UniGene:At.43590UniProt:O81417
Coordinates (TAIR10) chr4:-:992383..992996
Molecular Weight (calculated) 18103.80 Da
IEP (calculated) 9.41
GRAVY (calculated) 0.05
Length 165 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFSRLSFAA SLIVFSSLII SSVAYYGNEA DPETGKLIPI AVEGIIKCKS GGKTYPIQGA TARIACVKVD AYGNELVPIS ILSSKTDAKG YFIATIFPSQ
101: LRAGRTVTKC KTYLYKSPLA DCDFPTDVNK GVRGQPLSTY RILQDKSFKL YWAGPFFYTS EPTYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)