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AT4G02250.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plant invertase/pectin methylesterase inhibitor superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G55770.1); Has 90 Blast hits to 88 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JGHWeggNOG:ENOG410Z9HAEMBL:CP002687EnsemblPlants:AT4G02250
EnsemblPlants:AT4G02250.1entrez:827589Gene3D:1.20.140.40GeneID:827589
GO:GO:0004857Gramene:AT4G02250.1hmmpanther:PTHR31707hmmpanther:PTHR31707:SF63
InParanoid:F4JHA1InterPro:IPR006501KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11
KEGG:ath:AT4G02250OMA:FIDVDIWPaxDb:F4JHA1Pfam:PF04043
PRIDE:F4JHA1ProteinModelPortal:F4JHA1Proteomes:UP000006548RefSeq:NP_192134.2
SMART:SM00856SMR:F4JHA1SUPFAM:SSF101148TAIR:AT4G02250
TIGRfam:TIGR01614TIGRFAMs:TIGR01614UniGene:At.34318unipathway:UPA00545
UniProt:F4JHA1
Coordinates (TAIR10) chr4:+:983970..984523
Molecular Weight (calculated) 17202.60 Da
IEP (calculated) 4.46
GRAVY (calculated) 0.17
Length 160 amino acids
Sequence (TAIR10)
(BLAST)
001: MKMAGRIFLL FLSVYVTVAI ADKAFCVASL TSRPEAATAT APKLGVIALS IASSNASDTS FYIKAKLKQK NLEPALEDTL DDCSKNYLDA VAQLDDSLAA
101: LMQNSFIDVD IWLNTAISDG EACENALNDR AGNDAELARR NTNLLKLCKD ALLINTILTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)