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AT4G02080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : secretion-associated RAS super family 2
Curator
Summary (TAIR10)
A member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases.
Computational
Description (TAIR10)
secretion-associated RAS super family 2 (SAR2); FUNCTIONS IN: GTP binding; INVOLVED IN: intracellular protein transport; LOCATED IN: plasma membrane; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Small GTPase SAR1-type (InterPro:IPR006687), ARF/SAR superfamily (InterPro:IPR006689); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT3G62560.1); Has 6784 Blast hits to 6782 proteins in 374 species: Archae - 2; Bacteria - 40; Metazoa - 3245; Fungi - 1245; Plants - 1081; Viruses - 0; Other Eukaryotes - 1171 (source: NCBI BLink).
Protein Annotations
BioGrid:12661eggNOG:ENOG410YIKIeggNOG:KOG0077EMBL:AF001308EMBL:AF001535EMBL:AL161493EMBL:AY065357
EMBL:AY088765EMBL:AY096699EMBL:CP002687EMBL:U56929EMBL:Z26707EnsemblPlants:AT4G02080EnsemblPlants:AT4G02080.1
entrez:827368Gene3D:3.40.50.300GeneID:827368Genevisible:O04834GO:GO:0005525GO:GO:0005783GO:GO:0005794
GO:GO:0005886GO:GO:0006886GO:GO:0016192Gramene:AT4G02080.1hmmpanther:PTHR11711hmmpanther:PTHR11711:SF170HOGENOM:HOG000163690
InParanoid:O04834IntAct:O04834InterPro:IPR005225InterPro:IPR006687InterPro:IPR006689InterPro:IPR027417iPTMnet:O04834
KEGG:ath:AT4G02080KO:K07953OMA:FGWFRDIPaxDb:O04834Pfam:O04834Pfam:PF00025Pfscan:PS51422
PhylomeDB:O04834PIR:T01509PRIDE:O04834PRINTS:PR00328PRO:PR:O04834PROSITE:PS51422ProteinModelPortal:O04834
Proteomes:UP000006548Reactome:R-ATH-204005Reactome:R-ATH-5694530Reactome:R-ATH-983170RefSeq:NP_192117.1SMR:O04834STRING:3702.AT4G02080.1
SUPFAM:SSF52540TAIR:AT4G02080tair10-symbols:ASAR1tair10-symbols:ATSAR2tair10-symbols:ATSARA1Ctair10-symbols:SAR2TIGRfam:TIGR00231
TIGRFAMs:TIGR00231UniGene:At.24077UniProt:O04834
Coordinates (TAIR10) chr4:+:921554..922547
Molecular Weight (calculated) 22031.70 Da
IEP (calculated) 7.70
GRAVY (calculated) -0.17
Length 193 amino acids
Sequence (TAIR10)
(BLAST)
001: MFMIDWFYGV LASLGLWQKE AKILFLGLDN AGKTTLLHML KDERLVQHQP TQHPTSEELS IGKIKFKAFD LGGHQIARRV WKDYYAKVDA VVYLVDAYDK
101: ERFAESKKEL DALLSDESLA SVPFLILGNK IDIPYAASED ELRYHLGLSN FTTGKGKVNL TDSNVRPLEV FMCSIVRKMG YGEGFKWVSQ YIK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)