suba logo
AT4G01940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24361574 (2014): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NFU domain protein 1
Curator
Summary (TAIR10)
Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast.
Computational
Description (TAIR10)
NFU domain protein 1 (NFU1); CONTAINS InterPro DOMAIN/s: NIF system FeS cluster assembly, NifU, C-terminal (InterPro:IPR001075); BEST Arabidopsis thaliana protein match is: NIFU-like protein 2 (TAIR:AT5G49940.1); Has 4565 Blast hits to 4561 proteins in 1155 species: Archae - 11; Bacteria - 2225; Metazoa - 159; Fungi - 160; Plants - 186; Viruses - 3; Other Eukaryotes - 1821 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0694eggNOG:KOG2358EMBL:AC007138EMBL:AJ512933EMBL:AL161493EMBL:AY039552EMBL:AY050363
EMBL:AY102161EMBL:CP002687EnsemblPlants:AT4G01940EnsemblPlants:AT4G01940.1entrez:828196GeneID:828196Genevisible:Q93W77
GO:GO:0005198GO:GO:0005506GO:GO:0009507GO:GO:0009570GO:GO:0016226GO:GO:0051536Gramene:AT4G01940.1
hmmpanther:PTHR11178HOGENOM:HOG000006174InParanoid:Q93W77InterPro:IPR001075KEGG:ath:AT4G01940OMA:RPAIKNYPaxDb:Q93W77
Pfam:PF01106Pfam:Q93W77PhylomeDB:Q93W77PIR:H85024PRIDE:Q93W77PRO:PR:Q93W77ProteinModelPortal:Q93W77
Proteomes:UP000006548RefSeq:NP_567219.1SMR:Q93W77STRING:3702.AT4G01940.1SUPFAM:SSF117916TAIR:AT4G01940tair10-symbols:AtCNFU1
tair10-symbols:NFU1UniGene:At.48822UniGene:At.66619UniProt:Q93W77
Coordinates (TAIR10) chr4:-:842265..843388
Molecular Weight (calculated) 24769.60 Da
IEP (calculated) 5.76
GRAVY (calculated) 0.03
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MMASLATSIS GSFRILVKSS STRNGFPVIS DQNPSFVLFA NKRRHISRTA IFHRSAISGS SQGEKISPLA SGVSSGLYSA QTFDLTPQNV DLVLEDVRPF
101: LISDGGNVDV VSVEDGVVSL KLQGACTSCP SSSTTMTMGI ERVLKEKFGD ALKDIRQVFD EEVKQITVEA VNAHLDILRP AIKNYGGSVE VLSVEGEDCV
201: VKYVGPESIG MGIQAAIKEK FKDISNVTFT S
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)