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AT4G01920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.363
plasma membrane 0.173
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; INVOLVED IN: intracellular signaling pathway; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), DC1 (InterPro:IPR004146), C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT4G01930.1); Has 1803 Blast hits to 665 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 41; Fungi - 0; Plants - 1752; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4631eggNOG:ENOG410J727EMBL:AC007138EMBL:AL161493EMBL:AY064965EMBL:AY090320EMBL:CP002687
EnsemblPlants:AT4G01920EnsemblPlants:AT4G01920.1entrez:828197GeneID:828197GO:GO:0005622GO:GO:0035556GO:GO:0047134
Gramene:AT4G01920.1hmmpanther:PTHR32410hmmpanther:PTHR32410:SF152HOGENOM:HOG000064693IntAct:Q9SYI9InterPro:IPR004146InterPro:IPR011424
KEGG:ath:AT4G01920OMA:CISISEPPfam:PF03107Pfam:PF07649PhylomeDB:Q9SYI9PIR:F85024Proteomes:UP000006548
RefSeq:NP_192101.1SMR:Q9SYI9STRING:3702.AT4G01920.1SUPFAM:SSF57889TAIR:AT4G01920UniGene:At.28600UniProt:Q9SYI9
Coordinates (TAIR10) chr4:-:829103..831079
Molecular Weight (calculated) 76087.70 Da
IEP (calculated) 7.59
GRAVY (calculated) -0.34
Length 658 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSKGVLMPL IHEHLMMPWK NLKRGPCCGC CGRFEAISDG YYCKTCDFFV RKNCADEPSE YIKHPSHPKH TLQLLRPERP TNFCNLCGRM CPIFYRCDLC
101: DFDMDLYCSK YPPPEVIDIS KTHHHRLTLL KKWIKQCICA KCCKIIGNEF PYNCHECDLS FHVDCVWYPP ELELRLEVNH SYHSLHPLKL YAKGQLPDYS
201: DGKCRLCARK IDETFFFHCS PCNFTLDKVC VLRPPQQSLL NLKAHDHQLT LLPKLDSFTC NACGLKGDRS PYVCFQCGFM IHQDCLGLPR LININRHDHR
301: VSRTSVLGVV NSVCGVCRKK VDWSYGGFSC QRCHGYVVHS KCATRKDVWN GKELEGLPEE TEDIEPYVVI DENTIQHFSH KEHYLRLNVN GVLCDDNKRC
401: KACTHPICLQ SFYGCMDCNF ILHQNCAGFL RMKWHVLHNE RLTLVTNKDE GFRCYACDRL SNGFKYQHGN KAFDVRCISI SEPHIHPSHP NHPLYYFPSD
501: EVQWCTGCNM EQDFVLSCIE DNCGFLLCFG CATLPQMVKH RVHDHPLSLC YGEKASGKYW CDICEKETNP HTWFYTCKDH QASLHTKCVL GDLSSLMRRS
601: TIKIEGTSYE VVLNNSISRP FCSWCKMHCI FPIILKTLGA TNEYSCSLEC AECRYTDR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)