AT4G01870.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.951 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : tolB protein-related | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
tolB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1); Has 6090 Blast hits to 4220 proteins in 1098 species: Archae - 42; Bacteria - 3414; Metazoa - 20; Fungi - 42; Plants - 120; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:808473..810431 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 72818.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.85 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.47 | ||||||||||||||||||||||||||||||||||||
| Length | 652 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METPKGTIIF TTVGRTHYGF DVFSLNIATS VERRLTDGVS VNFNAQFVND KSDDVVFVSE RNGSARIYKT RSGISKPEQI PGAPESYFHD RPIITQNNRL 101: YFISAHEQPD RYFKNWSALY TVELNSAKRE VTRVTPPDTA DFSPAVSQSG DFLAVASYGT RSWGGEFHEI NTDITVFKAS KPETRVVICE RGGWPTWSGD 201: STVFFHHQAD DGWWSIFRVD IPENFTEYTD FPITPIRVTP SGLHCFTPAA FRDGKRIALA TRRRGVNHRH IEIYDLENTT FQPVTESLNP SFHHYNPFVS 301: PDSEFLGYHR FRGESTQGES IVPNIESIVS PIKTLRLLRI NGSFPSSSPN GDLIALNSDF DINGGIKVSK SDGSKRWTLI KDRTAFYNSW SPTERHVIYT 401: SLGPIFSPAR IAVQIARIKF DPSDLTADKE DLPCDVKILT LENTGNNAFP SCSPDGKSIV FRSGRSGHKN LYIVDAVNGE SNGGGIRRLT DGPWIDTMPC 501: WSPKGDLIGF SSNRHNPENT AVFGAYVVRP DGTGLRRIQI SGPEGSEEAA RERVNHVSFN KDGDWLVFAA NLSGVTAEPV TMPNQFQPYG DLYVVKLDGT 601: GLRRLTWNGY EDGTPTWHTA DELDLSQLNL NGQDGDKLEG QFEEPLWISC DI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)