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AT4G01870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.947
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tolB protein-related
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
tolB protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to cyclopentenone; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40-like Beta Propeller (InterPro:IPR011659), Peptidase S9B, dipeptidylpeptidase IV N-terminal (InterPro:IPR002469), Six-bladed beta-propeller, TolB-like (InterPro:IPR011042); BEST Arabidopsis thaliana protein match is: DPP6 N-terminal domain-like protein (TAIR:AT1G21680.1); Has 6090 Blast hits to 4220 proteins in 1098 species: Archae - 42; Bacteria - 3414; Metazoa - 20; Fungi - 42; Plants - 120; Viruses - 0; Other Eukaryotes - 2452 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0823eggNOG:ENOG410IK31EMBL:AC007138EMBL:AK227106EMBL:AL161493EMBL:BT006171EMBL:CP002687
EnsemblPlants:AT4G01870EnsemblPlants:AT4G01870.1entrez:828228Gene3D:2.120.10.30Gene3D:2.130.10.10GeneID:828228GO:GO:0006508
Gramene:AT4G01870.1hmmpanther:PTHR32161hmmpanther:PTHR32161:SF9InterPro:IPR002469InterPro:IPR011042InterPro:IPR011659InterPro:IPR015943
KEGG:ath:AT4G01870OMA:ADKERINPfam:PF00930Pfam:PF07676PhylomeDB:Q9SYI5PIR:A85024Proteomes:UP000006548
RefSeq:NP_192096.1SMR:Q9SYI5STRING:3702.AT4G01870.1SUPFAM:SSF82171TAIR:AT4G01870UniGene:At.19803UniProt:Q9SYI5
Coordinates (TAIR10) chr4:-:808473..810431
Molecular Weight (calculated) 72818.80 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.47
Length 652 amino acids
Sequence (TAIR10)
(BLAST)
001: METPKGTIIF TTVGRTHYGF DVFSLNIATS VERRLTDGVS VNFNAQFVND KSDDVVFVSE RNGSARIYKT RSGISKPEQI PGAPESYFHD RPIITQNNRL
101: YFISAHEQPD RYFKNWSALY TVELNSAKRE VTRVTPPDTA DFSPAVSQSG DFLAVASYGT RSWGGEFHEI NTDITVFKAS KPETRVVICE RGGWPTWSGD
201: STVFFHHQAD DGWWSIFRVD IPENFTEYTD FPITPIRVTP SGLHCFTPAA FRDGKRIALA TRRRGVNHRH IEIYDLENTT FQPVTESLNP SFHHYNPFVS
301: PDSEFLGYHR FRGESTQGES IVPNIESIVS PIKTLRLLRI NGSFPSSSPN GDLIALNSDF DINGGIKVSK SDGSKRWTLI KDRTAFYNSW SPTERHVIYT
401: SLGPIFSPAR IAVQIARIKF DPSDLTADKE DLPCDVKILT LENTGNNAFP SCSPDGKSIV FRSGRSGHKN LYIVDAVNGE SNGGGIRRLT DGPWIDTMPC
501: WSPKGDLIGF SSNRHNPENT AVFGAYVVRP DGTGLRRIQI SGPEGSEEAA RERVNHVSFN KDGDWLVFAA NLSGVTAEPV TMPNQFQPYG DLYVVKLDGT
601: GLRRLTWNGY EDGTPTWHTA DELDLSQLNL NGQDGDKLEG QFEEPLWISC DI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)