AT4G01700.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Chitinase family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Chitinase family protein; FUNCTIONS IN: chitinase activity; INVOLVED IN: carbohydrate metabolic process, cell wall macromolecule catabolic process; LOCATED IN: cell wall; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 19 (InterPro:IPR016283), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726); BEST Arabidopsis thaliana protein match is: Chitinase family protein (TAIR:AT1G02360.1); Has 2167 Blast hits to 2158 proteins in 471 species: Archae - 0; Bacteria - 548; Metazoa - 37; Fungi - 6; Plants - 1456; Viruses - 21; Other Eukaryotes - 99 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:732413..733487 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31466.30 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.00 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.40 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 280 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKQISLLLC LLLFIFSISS SLHETEARKH NKYKPAPIMS LVPRTLYDQI FIHKDNNACP AKGFYPYEAF VEATRSFPKF GSVGNFWTRR REVAAFLAQI 101: SHETTGGWAT APDGPYAWGL CFKEEVSPQS NYCDASNKDW PCVSGKSYKG RGPIQLSWNY NYGQAGRALG FDGLQNPELV ANNSVLAFKT ALWFWMTEQT 201: PKPSCHNVMV NRYRPTKADR AANRTVGYGL VTNIINGGLE CGIPGDGRVT DRVGYFQRYA QLFKVTTGPN LDCENQRPFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)