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AT4G01690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22550958 (2012): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Flavin containing amine oxidoreductase family
Curator
Summary (TAIR10)
Encodes protoporphyrinogen oxidase (PPOX).
Computational
Description (TAIR10)
PPOX; FUNCTIONS IN: oxygen-dependent protoporphyrinogen oxidase activity; INVOLVED IN: porphyrin biosynthetic process; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Amine oxidase (InterPro:IPR002937), Protoporphyrinogen oxidase (InterPro:IPR004572); BEST Arabidopsis thaliana protein match is: Flavin containing amine oxidoreductase family (TAIR:AT5G14220.1); Has 2258 Blast hits to 2244 proteins in 787 species: Archae - 6; Bacteria - 1416; Metazoa - 200; Fungi - 137; Plants - 154; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G01690-MONOMERBioCyc:ARA:GQT-2158-MONOMERBioCyc:MetaCyc:AT4G01690-MONOMERBioGrid:13282
ChEMBL:CHEMBL2366479EC:1.3.3.4eggNOG:COG1232eggNOG:KOG1276
EMBL:AF104919EMBL:AF386944EMBL:AL161492EMBL:BT020418
EMBL:BT020535EMBL:CP002687EMBL:D83139EnsemblPlants:AT4G01690
EnsemblPlants:AT4G01690.1entrez:827991Gene3D:3.50.50.60Gene3D:3.90.660.20
GeneID:827991Genevisible:P55826GO:GO:0004729GO:GO:0006779
GO:GO:0006782GO:GO:0009507GO:GO:0009534GO:GO:0009941
GO:GO:0015995gramene_pathway:1.3.3.4gramene_pathway:CHLOROPHYLL-SYNgramene_pathway:HEME-BIOSYNTHESIS-II
hmmpanther:PTHR10742hmmpanther:PTHR10742:SF294HOGENOM:HOG000269479InParanoid:P55826
InterPro:IPR002937InterPro:IPR004572InterPro:IPR023753InterPro:IPR027418
iPTMnet:P55826KEGG:00860+1.3.3.4KEGG:ath:AT4G01690KO:K00231
OMA:TIQERGKPaxDb:P55826Pfam:P55826Pfam:PF01593
PhylomeDB:P55826PIR:G85021PIR:T02005PRIDE:P55826
PRO:PR:P55826ProteinModelPortal:P55826Proteomes:UP000006548RefSeq:NP_192078.1
RefSeq:NP_849283.1SMR:P55826STRING:3702.AT4G01690.1SUPFAM:SSF51905
SUPFAM:SSF54373TAIR:AT4G01690tair10-symbols:HEMG1tair10-symbols:PPO1
tair10-symbols:PPOXTIGRfam:TIGR00562TIGRFAMs:TIGR00562UniGene:At.19758
UniGene:At.70176UniPathway:UPA00251UniPathway:UPA00668UniProt:P55826
Coordinates (TAIR10) chr4:+:729929..732309
Molecular Weight (calculated) 57698.80 Da
IEP (calculated) 9.43
GRAVY (calculated) -0.13
Length 537 amino acids
Sequence (TAIR10)
(BLAST)
001: MELSLLRPTT QSLLPSFSKP NLRLNVYKPL RLRCSVAGGP TVGSSKIEGG GGTTITTDCV IVGGGISGLC IAQALATKHP DAAPNLIVTE AKDRVGGNII
101: TREENGFLWE EGPNSFQPSD PMLTMVVDSG LKDDLVLGDP TAPRFVLWNG KLRPVPSKLT DLPFFDLMSI GGKIRAGFGA LGIRPSPPGR EESVEEFVRR
201: NLGDEVFERL IEPFCSGVYA GDPSKLSMKA AFGKVWKLEQ NGGSIIGGTF KAIQERKNAP KAERDPRLPK PQGQTVGSFR KGLRMLPEAI SARLGSKVKL
301: SWKLSGITKL ESGGYNLTYE TPDGLVSVQS KSVVMTVPSH VASGLLRPLS ESAANALSKL YYPPVAAVSI SYPKEAIRTE CLIDGELKGF GQLHPRTQGV
401: ETLGTIYSSS LFPNRAPPGR ILLLNYIGGS TNTGILSKSE GELVEAVDRD LRKMLIKPNS TDPLKLGVRV WPQAIPQFLV GHFDILDTAK SSLTSSGYEG
501: LFLGGNYVAG VALGRCVEGA YETAIEVNNF MSRYAYK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)