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AT4G01680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : myb domain protein 55
Curator
Summary (TAIR10)
Encodes a putative transcription factor (MYB55).
Computational
Description (TAIR10)
myb domain protein 55 (MYB55); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287), Myb transcription factor (InterPro:IPR015495); BEST Arabidopsis thaliana protein match is: myb domain protein 61 (TAIR:AT1G09540.1); Has 8918 Blast hits to 8213 proteins in 473 species: Archae - 0; Bacteria - 0; Metazoa - 751; Fungi - 506; Plants - 5859; Viruses - 3; Other Eukaryotes - 1799 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:AF176000EMBL:AL161492EMBL:AY054575EMBL:BT000352EMBL:CP002687
EnsemblPlants:AT4G01680EnsemblPlants:AT4G01680.1entrez:826853ExpressionAtlas:Q9M118Gene3D:1.10.10.60GeneID:826853GO:GO:0003677
Gramene:AT4G01680.1hmmpanther:PTHR10641hmmpanther:PTHR10641:SF618HOGENOM:HOG000237600InterPro:IPR001005InterPro:IPR009057InterPro:IPR017930
Pfam:PF00249Pfscan:PS51294PhylomeDB:Q9M118PIR:F85021PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_192077.1
SMART:SM00717SMR:Q9M118STRING:3702.AT4G01680.2SUPFAM:SSF46689TAIR:AT4G01680tair10-symbols:AtMYB55tair10-symbols:MYB55
UniGene:At.3837UniGene:At.67361UniProt:Q9M118
Coordinates (TAIR10) chr4:-:716222..717415
Molecular Weight (calculated) 37888.30 Da
IEP (calculated) 7.59
GRAVY (calculated) -0.72
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRHSCCYKQ KLRKGLWSPE EDEKLLRYIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY LRPDLKRGAF SQDEENLIIE LHAVLGNRWS QIAAQLPGRT
101: DNEIKNLWNS CLKKKLRLRG IDPVTHKLLT EIETGTDDKT KPVEKSQQTY LVETDGSSST TTCSTNQNNN TDHLYTGNFG FQRLSLENGS RIAAGSDLGI
201: WIPQTGRNHH HHVDETIPSA VVLPGSMFSS GLTGYRSSNL GLIELENSFS TGPMMTEHQQ IQESNYNNST FFGNGNLNWG LTMEENQNPF TISNHSNSSL
301: YSDIKSETNF FGTEATNVGM WPCNQLQPQQ HAYGHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)