AT4G01570.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 59349 Blast hits to 13105 proteins in 268 species: Archae - 8; Bacteria - 24; Metazoa - 241; Fungi - 448; Plants - 57026; Viruses - 0; Other Eukaryotes - 1602 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:679487..681904 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 89938.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.83 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 805 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRHGRGSAVS AAISGLSPAK NSPFPQLCNV LLVASLSKTL SQSGTRSLDA NSIPISEPVV LQILRRNSID PSKKLDFFRW CYSLRPGYKH SATAYSQIFR 101: TVCRTGLLGE VPDLLGSMKE DGVNLDQTMA KILLDSLIRS GKFESALGVL DYMEELGDCL NPSVYDSVLI ALVKKHELRL ALSILFKLLE ASDNHSDDDT 201: GRVIIVSYLP GTVAVNELLV GLRRADMRSE FKRVFEKLKG MKRFKFDTWS YNICIHGFGC WGDLDAALSL FKEMKERSSV YGSSFGPDIC TYNSLIHVLC 301: LFGKAKDALI VWDELKVSGH EPDNSTYRIL IQGCCKSYRM DDAMRIYGEM QYNGFVPDTI VYNCLLDGTL KARKVTEACQ LFEKMVQEGV RASCWTYNIL 401: IDGLFRNGRA EAGFTLFCDL KKKGQFVDAI TFSIVGLQLC REGKLEGAVK LVEEMETRGF SVDLVTISSL LIGFHKQGRW DWKEKLMKHI REGNLVPNVL 501: RWNAGVEASL KRPQSKDKDY TPMFPSKGSF LDIMSMVGSE DDGASAEEVS PMEDDPWSSS PYMDQLAHQR NQPKPLFGLA RGQRVEAKPD SFDVDMMNTF 601: LSIYLSKGDL SLACKLFEIF NGMGVTDLTS YTYNSMMSSF VKKGYFQTAR GVLDQMFENF CAADIATYNV IIQGLGKMGR ADLASAVLDR LTKQGGYLDI 701: VMYNTLINAL GKATRLDEAT QLFDHMKSNG INPDVVSYNT MIEVNSKAGK LKEAYKYLKA MLDAGCLPNH VTDTILDYLG KEMEKARFKK ASFVRNKPNN 801: NNISS |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)