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AT4G01440.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : nodulin MtN21 /EamA-like transporter family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
nodulin MtN21 /EamA-like transporter family protein; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6, transmembrane (InterPro:IPR000620); BEST Arabidopsis thaliana protein match is: nodulin MtN21 /EamA-like transporter family protein (TAIR:AT4G01450.2); Has 3147 Blast hits to 3133 proteins in 491 species: Archae - 24; Bacteria - 1505; Metazoa - 6; Fungi - 0; Plants - 1206; Viruses - 0; Other Eukaryotes - 406 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKY7eggNOG:ENOG410YEU9EMBL:AF069300EMBL:AL161492
EMBL:AY088033EMBL:CP002687EnsemblPlants:AT4G01440EnsemblPlants:AT4G01440.1
entrez:826697GeneID:826697Genevisible:Q9M130GO:GO:0005886
GO:GO:0006810GO:GO:0016021GO:GO:0022857GO:GO:0055085
Gramene:AT4G01440.1hmmpanther:PTHR31218hmmpanther:PTHR31218:SF10HOGENOM:HOG000237441
InParanoid:Q9M130InterPro:IPR000620InterPro:IPR030184KEGG:ath:AT4G01440
OMA:LMKEECEPANTHER:PTHR31218PaxDb:Q9M130Pfam:PF00892
Pfam:Q9M130PhylomeDB:Q9M130PIR:G85018PIR:T01373
PRIDE:Q9M130PRO:PR:Q9M130ProteinModelPortal:Q9M130Proteomes:UP000006548
RefSeq:NP_192053.1SUPFAM:0043518TAIR:AT4G01440TMHMM:TMhelix
UniGene:At.34428UniProt:Q9M130
Coordinates (TAIR10) chr4:+:596531..598512
Molecular Weight (calculated) 40445.80 Da
IEP (calculated) 8.98
GRAVY (calculated) 0.60
Length 365 amino acids
Sequence (TAIR10)
(BLAST)
001: MGYCDGKWTP VIIMVMINSA LGLANALVKK VLDGGVNHMV IATYRLAIST LFLAPIAFFW ERKTRPTLTL NILVQLFFSA LVGASLTQYF FLLGLSYTSA
101: TLACAFISMT PAITFVMALI FRVEKLNMKS KAGMGMVMGA LICIGGALLL TMYKGVPLTK LRKLETHQLI NNNHAMKPEN WIIGCVLLFA GSSCFGSWML
201: IQAKVNEKYP CQYSSTVVLS FFGTIQCALL SLIKSRDITA WILTDKLDIV TIVYAGAVAQ GICTVGTSWC IRKRGPIFTS IFTPVGLIFA TLFDFLILHR
301: QIFLGSVVGS GVVIFGLYIF LLGKVRLMKE ECEKKLPCRF NEDDQEEDDD EQYKKGHLMV VPMTP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)