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AT4G01390.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TRAF-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G00780.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:CP002687EnsemblPlants:AT4G01390EnsemblPlants:AT4G01390.1entrez:828075Gene3D:2.60.210.10
GeneID:828075GO:GO:0005634GO:GO:0005737Gramene:AT4G01390.1InParanoid:F4JI18InterPro:IPR002083InterPro:IPR008974
KEGG:ath:AT4G01390OMA:FREFISLPaxDb:F4JI18Pfam:PF00917Pfscan:PS50144PRIDE:F4JI18PROSITE:PS50144
ProteinModelPortal:F4JI18Proteomes:UP000006548RefSeq:NP_192048.2SMART:SM00061STRING:3702.AT4G01390.1SUPFAM:SSF49599TAIR:AT4G01390
UniGene:At.54080UniProt:F4JI18
Coordinates (TAIR10) chr4:-:570242..571595
Molecular Weight (calculated) 34274.10 Da
IEP (calculated) 8.15
GRAVY (calculated) -0.36
Length 300 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRPISLEEM VRLFKVRHAT AHMFKIDHFS LLRKHGIEKV ESSVFDLAGH KWKLSVHPNG HTNAKGTHYV SLYLMNQAPV YDTLTYELLA VSQLEPKWHT
101: HGRDEYETNE ELGSEGFREF ISLVDLKKNG FLIGDCCMFG VKFHGIEPAK PGTAESFSLI EKPLNHRVTW MMTMFSSFNP GNVHQSNEFV VGTRKWRIKV
201: HPRGSMGEKD KSFSVYLSAL GFVNNAPKTK TYARFKLRVL DQVSRNHVEK TISGWLGAEP DDRHGFADFM PLGELDDPYL VKDKLYVGVD FDVISVSNYC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)