suba logo
AT4G01220.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Nucleotide-diphospho-sugar transferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Nucleotide-diphospho-sugar transferase family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388), Nucleotide-diphospho-sugar transferase, predicted (InterPro:IPR005069); BEST Arabidopsis thaliana protein match is: rhamnogalacturonan xylosyltransferase 2 (TAIR:AT4G01750.1); Has 332 Blast hits to 328 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Protein Annotations
CAZy:GT77EC:2.4.2.-eggNOG:ENOG410IFDFeggNOG:ENOG4111Z77EMBL:AF370497EMBL:AL161491EMBL:BT020481
EMBL:BT033130EMBL:CP002687EnsemblPlants:AT4G01220EnsemblPlants:AT4G01220.1EnsemblPlants:AT4G01220.2entrez:828028ExpressionAtlas:Q9M146
ExpressionAtlas:W8QNI2GeneID:828028Genevisible:Q9M146GO:GO:0000139GO:GO:0005794GO:GO:0010306GO:GO:0016021
GO:GO:0035252GO:GO:0042285GO:GO:0048868hmmpanther:PTHR10994hmmpanther:PTHR10994:SF60HOGENOM:HOG000241399InParanoid:Q9M146
InterPro:IPR005069InterPro:IPR029044KEGG:ath:AT4G01220KO:K11714OMA:KRFRDYGPaxDb:Q9M146Pfam:PF03407
Pfam:Q9M146PhylomeDB:Q9M146PIR:A85016PRIDE:Q9M146PRO:PR:Q9M146ProteinModelPortal:Q9M146Proteomes:UP000006548
RefSeq:NP_567211.1RefSeq:NP_849279.1STRING:3702.AT4G01220.1SUPFAM:SSF53448TAIR:AT4G01220TMHMM:TMhelixUniGene:At.20197
UniProt:Q9M146UniProt:W8QNI2
Coordinates (TAIR10) chr4:-:513431..515648
Molecular Weight (calculated) 41122.70 Da
IEP (calculated) 9.82
GRAVY (calculated) -0.29
Length 360 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQQKFLHQR PIQNPFTNPF SSSPLSTSSI SNRPISLLSR NGLLLLLALL VILGVFLPWA GSPLFPSPNK LSPSQSKWRD YSLPQAVKFV AKNGTVIVCA
101: VSYPYLPFLN NWLISVSRQK HQDQVLVIAE DYATLYKVNE KWPGHAVLIP PALDSQTAHK FGSQGFFNFT ARRPQHLLEI LELGYNVMYN DVDMVWLQDP
201: FQYLEGKHDA YFMDDMTAIK PLDHSHDLPP PGKKGRTYIC SCMIFLRPTN GAKLLMKKWI EELETQPWSR AKKANDQPGF NWALNKTANQ VDMYLLSQAA
301: FPTGGLYFKN KTWVKETKGK HAIIHNNYIV GFEKKIKRFR DFNLWLVDDH ASESPLGKLE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)