AT4G01210.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.999 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : glycosyl transferase family 1 protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
glycosyl transferase family 1 protein; FUNCTIONS IN: transferase activity, transferring glycosyl groups; INVOLVED IN: biosynthetic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, group 1 (InterPro:IPR001296); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT5G04480.1); Has 816 Blast hits to 811 proteins in 174 species: Archae - 9; Bacteria - 331; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:507738..512362 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119405.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.70 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||
| Length | 1031 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGSLESGIPT KRDNGGVRGG RQQQQQQQQQ QFFLQRNRSR LSRFFLLKSF NYLLWISIIC VFFFFAVLFQ MFLPGLVIDK SDKPWISKEI LPPDLVGFRE 0101: KGFLDFGDDV RIEPTKLLMK FQRDAHGFNF TSSSLNTTLQ RFGFRKPKLA LVFGDLLADP EQVLMVSLSK ALQEVGYAIE VYSLEDGPVN SIWQKMGVPV 0201: TILKPNQESS CVIDWLSYDG IIVNSLRARS MFTCFMQEPF KSLPLIWVIN EETLAVRSRQ YNSTGQTELL TDWKKIFSRA SVVVFHNYLL PILYTEFDAG 0301: NFYVIPGSPE EVCKAKNLEF PPQKDDVVIS IVGSQFLYKG QWLEHALLLQ ALRPLFSGNY LESDNSHLKI IVLGGETASN YSVAIETISQ NLTYPKEAVK 0401: HVRVAGNVDK ILESSDLVIY GSFLEEQSFP EILMKAMSLG KPIVAPDLFN IRKYVDDRVT GYLFPKQNLK VLSQVVLEVI TEGKISPLAQ KIAMMGKTTV 0501: KNMMARETIE GYAALLENML KFSSEVASPK DVQKVPPELR EEWSWHPFEA FMDTSPNNRI ARSYEFLAKV EGHWNYTPGE AMKFGAVNDD SFVYEIWEEE 0601: RYLQMMNSKK RREDEELKSR VLQYRGTWED VYKSAKRADR SKNDLHERDE GELLRTGQPL CIYEPYFGEG TWSFLHQDPL YRGVGLSVKG RRPRMDDVDA 0701: SSRLPLFNNP YYRDALGDFG AFFAISNKID RLHKNSWIGF QSWRATARKE SLSKIAEDAL LNAIQTRKHG DALYFWVRMD KDPRNPLQKP FWSFCDAINA 0801: GNCRFAYNET LKKMYSIKNL DSLPPMPEDG DTWSVMQSWA LPTRSFLEFV MFSRMFVDSL DAQIYEEHHR TNRCYLSLTK DKHCYSRVLE LLVNVWAYHS 0901: ARRIVYIDPE TGLMQEQHKQ KNRRGKMWVK WFDYTTLKTM DEDLAEEADS DRRVGHWLWP WTGEIVWRGT LEKEKQKKNL EKEEKKKKSR DKLSRMRSRS 1001: GRQKVIGKYV KPPPENETVT GNSTLLNVVD A |
||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)