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AT4G01130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.957
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:27177187 (2016): nucleus
  • PMID:24393051 (2015): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GDSL-like Lipase/Acylhydrolase superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT3G26430.1); Has 3308 Blast hits to 3260 proteins in 151 species: Archae - 0; Bacteria - 130; Metazoa - 0; Fungi - 52; Plants - 3122; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G01130-MONOMEREC:3.1.1.-eggNOG:ENOG410IK7NeggNOG:ENOG410Y9BREMBL:AF007269EMBL:AK229518EMBL:AL161491
EMBL:BT029544EMBL:CP002687EnsemblPlants:AT4G01130EnsemblPlants:AT4G01130.1entrez:828207Gene3D:3.40.50.1110GeneID:828207
Genevisible:Q9M153GO:GO:0005576GO:GO:0016042GO:GO:0016788Gramene:AT4G01130.1hmmpanther:PTHR22835hmmpanther:PTHR22835:SF200
HOGENOM:HOG000237648InParanoid:Q9M153InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT4G01130OMA:DYRHGANPaxDb:Q9M153
Pfam:PF00657Pfam:Q9M153PhylomeDB:Q9M153PIR:H85014PIR:T01727PRIDE:Q9M153PRO:PR:Q9M153
ProteinModelPortal:Q9M153Proteomes:UP000006548RefSeq:NP_192022.1TAIR:AT4G01130UniGene:At.34475UniProt:Q9M153
Coordinates (TAIR10) chr4:+:485868..488007
Molecular Weight (calculated) 42015.70 Da
IEP (calculated) 9.19
GRAVY (calculated) 0.01
Length 382 amino acids
Sequence (TAIR10)
(BLAST)
001: MASDINRRRS FSLLVLIIVM LYGHKGDSKC DFEAIFNFGD SNSDTGGFWA AFPAQSGPWG MTYFKKPAGR ASDGRLIIDF LAKSLGMPFL SPYLQSIGSD
101: FRHGANFATL ASTVLLPNTS LFVSGISPFS LAIQLNQMKQ FKVNVDESHS LDRPGLKILP SKIVFGKSLY TFYIGQNDFT SNLASIGVER VKLYLPQVIG
201: QIAGTIKEIY GIGGRTFLVL NLAPVGCYPA ILTGYTHTDA DLDKYGCLIP VNKAVKYYNT LLNKTLSQTR TELKNATVIY LDTHKILLDL FQHPKSYGMK
301: HGIKACCGYG GRPYNFNQKL FCGNTKVIGN FSTTAKACHD PHNYVSWDGI HATEAANHHI SMAILDGSIS YPPFILNNLC SP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)