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AT4G01050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:27122571 (2016): mitochondrion
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thylakoid rhodanese-like
Curator
Summary (TAIR10)
hydroxyproline-rich glycoprotein family protein, contains a rhodanese homology domain. Required for anchoring the FNR flavoenzyme to the thylakoid membranes and sustaining high efficiency photosynthetic linear electron flow.
Computational
Description (TAIR10)
thylakoid rhodanese-like (TROL); FUNCTIONS IN: protein binding; INVOLVED IN: defense response to bacterium, photosynthetic electron transport in photosystem II; LOCATED IN: chloroplast thylakoid membrane, chloroplast, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Rhodanese-like (InterPro:IPR001763); BEST Arabidopsis thaliana protein match is: Rhodanese/Cell cycle control phosphatase superfamily protein (TAIR:AT3G25480.1); Has 6015 Blast hits to 4196 proteins in 851 species: Archae - 23; Bacteria - 2268; Metazoa - 876; Fungi - 517; Plants - 614; Viruses - 167; Other Eukaryotes - 1550 (source: NCBI BLink).
Protein Annotations
BioGrid:13212eggNOG:ENOG410IIUMeggNOG:ENOG4111G9PEMBL:AF007269EMBL:AK226302EMBL:AL161491EMBL:AY057565
EMBL:AY057701EMBL:AY124870EMBL:CP002687EnsemblPlants:AT4G01050EnsemblPlants:AT4G01050.1entrez:827921EvolutionaryTrace:Q9M158
Gene3D:3.40.250.10GeneID:827921Genevisible:Q9M158GO:GO:0004568GO:GO:0005576GO:GO:0006032GO:GO:0008061
GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009772GO:GO:0009941GO:GO:0016021GO:GO:0042742
Gramene:AT4G01050.1hmmpanther:PTHR11177hmmpanther:PTHR11177:SF167HOGENOM:HOG000238961InParanoid:Q9M158InterPro:IPR001763KEGG:ath:AT4G01050
OMA:PWGVESAPaxDb:Q9M158PDB:1VEEPDB:2DCQPDBsum:1VEEPDBsum:2DCQPfam:Q9M158
PhylomeDB:Q9M158PIR:H85013PIR:T01733PRIDE:Q9M158PRO:PR:Q9M158ProteinModelPortal:Q9M158Proteomes:UP000006548
RefSeq:NP_567209.1SMR:Q9M158STRING:3702.AT4G01050.1SUPFAM:SSF52821TAIR:AT4G01050tair10-symbols:TROLUniGene:At.22549
UniGene:At.70023UniGene:At.75032UniProt:Q9M158
Coordinates (TAIR10) chr4:+:455874..458175
Molecular Weight (calculated) 49389.80 Da
IEP (calculated) 4.94
GRAVY (calculated) -0.17
Length 466 amino acids
Sequence (TAIR10)
(BLAST)
001: MEALKTATFS PMSVLSEKRS EPRKPFSLPN LFPPKSQRPI SQESFLKRFN GGLALLTSVL SSATAPAKSL TYEEALQQSM TTSSSFDSDG LIEGISNFVT
101: DNPLVIAGGV AALAVPFVLS QVLNKKPKSW GVESAKNAYT KLGTDDNAQL LDIRATADFR QVGSPNIKGL GKKAVSTVYN GEDKPGFLKK LSLKFKDPEN
201: TTLYILDKFD GNSELVAELV ALNGFKSAYA IKDGAEGPRG WLNSSLPWIE PKKTLSLDLS SLTDSISGVF GESSDGVSVA LGVAAAAGLS VFAFTEIETI
301: LQLLGSAALV QLAGKKLLFA EDRKQTLKQV DEFLNTKVAP KELVDELKEI GKALLPQSTS NKALPAPATV TAEAESATAT TTTVDKPVPE PETVAATTTT
401: VDKPVPEPEP VPEPVPVPAI EAAVAAQVIT EPTETEAKPK PHSRPLSPYA SYPDLKPPSS PMPSQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)