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AT4G01010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 0.785
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : cyclic nucleotide-gated channel 13
Curator
Summary (TAIR10)
member of Cyclic nucleotide gated channel family
Computational
Description (TAIR10)
cyclic nucleotide-gated channel 13 (CNGC13); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide gated channel 10 (TAIR:AT1G01340.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:11726eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AL080237EMBL:AL161491EMBL:CP002687EnsemblPlants:AT4G01010
EnsemblPlants:AT4G01010.1entrez:826427Gene3D:2.60.120.10GeneID:826427Genevisible:Q9LD40GO:GO:0005249GO:GO:0005886
GO:GO:0016021GO:GO:0030552GO:GO:0030553GO:GO:0042391GO:GO:0071805Gramene:AT4G01010.1hmmpanther:PTHR10217
hmmpanther:PTHR10217:SF465HOGENOM:HOG000238338InParanoid:Q9LD40InterPro:IPR000595InterPro:IPR005821InterPro:IPR014710InterPro:IPR018490
KEGG:ath:AT4G01010KO:K05391OMA:CWREACEPaxDb:Q9LD40Pfam:PF00027Pfam:PF00520Pfam:Q9LD40
Pfscan:PS50042PhylomeDB:Q9LD40PIR:D85013PRIDE:Q9LD40PRO:PR:Q9LD40PROSITE:PS50042ProteinModelPortal:Q9LD40
Proteomes:UP000006548Reactome:R-ATH-2485179Reactome:R-ATH-2514859Reactome:R-ATH-5620916RefSeq:NP_192010.2SMART:SM00100SMR:Q9LD40
STRING:3702.AT4G01010.1SUPFAM:SSF51206SUPFAM:SSF81324TAIR:AT4G01010tair10-symbols:ATCNGC13tair10-symbols:CNGC13TMHMM:TMhelix
UniGene:At.54067UniProt:Q9LD40
Coordinates (TAIR10) chr4:-:434569..437242
Molecular Weight (calculated) 80478.00 Da
IEP (calculated) 9.68
GRAVY (calculated) -0.20
Length 696 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFGRNNRVR FRDWISEGTE YGYGRNKARP SLNTVLKNVR RGLKKPLSFG SHNKKRDSNS STTTQKNIIN PQGSFLQNWN KIFLFASVIA LAIDPLFFYI
101: PIVDGERHCL NLHRNLEIAA SVLRTFIDAF YIIHIVFQFR TAYISPSSRV FGRGELVDDP KAIAIKYLSS YFIIDLLSIL PLPQLVVLAV IPNVNKPVSL
201: ITKDYLITVI FTQYIPRILR IYPLYTEVTR TSGIVTETAW AGAAWNLSLY MLASHVFGAL WYLISVERED RCWREACEKI PEVCNFRFLY CDGNSSVRND
301: FLTTSCPFIN PDDITNSTVF NFGIFTDALK SGIVESDDFW KKFFYCFWWG LRNLSALGQN LNTSKFVGEI IFAVSICISG LVLFALLIGN MQKYLESTTV
401: REEEMRVRKR DAEQWMSHRM LPDDLRKRIR RYEQYKWQET RGVEEENLLR NLPKDLRRDI KRHFCLDLLK KVPLFEIMDE QLLDAVCDKL KPVLYTENSY
501: AIREGDPVEE MLFVMRGKLM SATTNGGRTG FFNAVYLKPS DFCGEDLLTW ALDPQSSSHF PISTRTVQAL TEVEAFALAA DDLKLVASQF RRLHSKQLQH
601: TFRFYSVQWR TWGASFIQAA WRRHCRRKLA RSLTEEEDRF RNAITKRERN AASSSSLVAT LYASRFASNA LRNLRTNNLP LLPPKPSEPD FSLRNP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)