AT4G00990.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription factor jumonji (jmjC) domain-containing protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Transcription factor jumonji (jmjC) domain-containing protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), Zinc finger, RING-type (InterPro:IPR001841), Transcription factor jumonji (InterPro:IPR013129); BEST Arabidopsis thaliana protein match is: Transcription factor jumonji (jmjC) domain-containing protein (TAIR:AT1G11950.1); Has 966 Blast hits to 671 proteins in 113 species: Archae - 0; Bacteria - 8; Metazoa - 538; Fungi - 54; Plants - 301; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:427035..431535 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 96110.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.51 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.74 | ||||||||||||||||||||||||||||||||||||
| Length | 840 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKMRGKRIR PRDSGELVED GRSESERKTR KKENDVVSKG RIGRGRGRGE VSKRSIEIDI SNPEKDIKPD GSRKCLGSTC HHCKILTSES DLIFCSKCNK 101: KCYCFDCIKR SYSERTHEEV RAACPFCMMT CICRACLRLP LVIKPPSEKD TDVKLKQLQY LLVKVLPVLK DIYTEQNREL EIESTIRGHP VTEANIKRCK 201: LDPSERIYCD LCRTSIANFH RSCPNKNCSV DICLSCCKEL SEGFHQERDG KKNAEGKGYE CRIPAGQGKD SDAYVPLHFS TWKLNSDSSI PCPPKECGGC 301: GTSTLELRRL WKRDWVEKLI TNAEKCTLNF RPTDVDIVHE CSSCSTNSDS IRRQAAFRKN AHDNFLYSPN AVDLAEDDIA HFQFHWMKAE PVIVRNVLEK 401: TSGLSWEPMV MWRACREMDP KRKGTEEETT KVKALDCLDW CEVEINLHQF FEGYLEGRMH KNGWPEMLKL KDWPPSDLFE KRLPRHNAEF IAALPFFDYT 501: DPKSGILNLA TRFPEGSLKP DLGPKTYIAY GFHEELNRGD SVTKLHCDIS DAVNVLTHTA KVEIPPVKYQ NIKVHQKKYA EAMLQKQQYS GQVKEASELE 601: NKSMKEVDES KKDLKDKAAN EEQSNNSSRP SGSGEAEKVI ISKEDNPTQP AVSTSVESIQ EQKLDAPKET DGNTNERSKA VHGGAVWDIF RREDVPKLIQ 701: FLKRHEHEFR HFNNEPLESV IHPIHDQTMF LSDSQKKQLK EEFDIEPWTF EQHLGEAVFI PAGCPHQVRN RQSCIKVALD FVAPESVEEC LRLTQEFRRL 801: PKDHSSSEDK LELKKIALYA ASSAIREVKG LMQSSRRSDT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)