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AT4G00980.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc knuckle (CCHC-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCHC-type (InterPro:IPR001878), DEK, C-terminal (InterPro:IPR014876); BEST Arabidopsis thaliana protein match is: transcriptional coactivator p15 (PC4) family protein (KELP) (TAIR:AT4G10920.2); Has 580 Blast hits to 578 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 36; Fungi - 5; Plants - 539; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J543eggNOG:ENOG410XUB8EMBL:AK117983EMBL:BT005886
EMBL:CP002687EnsemblPlants:AT4G00980EnsemblPlants:AT4G00980.1entrez:827935
Gene3D:1.10.10.60GeneID:827935GO:GO:0003677GO:GO:0008270
Gramene:AT4G00980.1hmmpanther:PTHR11439hmmpanther:PTHR11439:SF170HOGENOM:HOG000215958
IntAct:Q8GXX5InterPro:IPR001878InterPro:IPR009057InterPro:IPR014876
KEGG:ath:AT4G00980OMA:WMLMERVPfam:PF08766Pfam:PF14227
Pfscan:PS50158PhylomeDB:Q8GXX5PROSITE:PS50158Proteomes:UP000006548
RefSeq:NP_567205.2SMR:Q8GXX5STRING:3702.AT4G00980.1TAIR:AT4G00980
UniGene:At.34490UniProt:Q8GXX5
Coordinates (TAIR10) chr4:-:422732..424580
Molecular Weight (calculated) 55066.20 Da
IEP (calculated) 7.97
GRAVY (calculated) -0.60
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MENSLLDSGE TMEIVATQKI EETVKSILSE SDMDQMTEFK LRLDASAKLG IDLSGTNHKK LVRDVLEVFL LSTPGEALVP ETVAPAKNET VSVAAASVGG
101: EDERFICKLS EKQNATVQRY RGQPFLSIGS QEHGKAFRGA HLSTNQWSVI KKNFAAIEDG IKQCQSKLKS EAARNGDTSE AVDKDSSHGF SVIKISRFDG
201: KSYLYWASQM ELFLKQLKLT YVLSEPCPSI GSSQGPETNP REITRADATG KKWLRDDYLC YTHLMNSLSD HLYRRYSQKF KHAKELWDEL KWVYQCDESK
301: SKRSQVRKYI EFRMVEERPI LEQVQVFNKI ADSIVSAGMF LDEAFHVSTI ISKFPPSWRG FCTRLMEEEY LPVWMLMERV KAEEELLRNG AKGVTYRPAT
401: GSSQMERTPS LGTTHRGSQS VGWKRKEPER DERVIIVCDN CGRKGHLAKH CWGSKSDERA SGKSNRINSS VAAPVESETQ ATTNNDRG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)