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AT4G00950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF688)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 47 (MEE47); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3BPeggNOG:ENOG41116TUEMBL:AF013294EMBL:AL161491EMBL:AY065223EMBL:AY142586EMBL:CP002687
EnsemblPlants:AT4G00950EnsemblPlants:AT4G00950.1entrez:827948GeneID:827948Genevisible:Q9M160GO:GO:0003700GO:GO:0006355
GO:GO:0009793Gramene:AT4G00950.1hmmpanther:PTHR34371hmmpanther:PTHR34371:SF2HOGENOM:HOG000272662InterPro:IPR007789iPTMnet:Q9M160
KEGG:ath:AT4G00950PaxDb:Q9M160Pfam:PF05097Pfam:Q9M160PhylomeDB:Q9M160PIR:T01552PRO:PR:Q9M160
ProteinModelPortal:Q9M160Proteomes:UP000006548RefSeq:NP_192004.1STRING:3702.AT4G00950.1TAIR:AT4G00950tair10-symbols:MEE47UniGene:At.28617
UniProt:Q9M160
Coordinates (TAIR10) chr4:-:405984..407087
Molecular Weight (calculated) 32169.40 Da
IEP (calculated) 8.76
GRAVY (calculated) -0.77
Length 291 amino acids
Sequence (TAIR10)
(BLAST)
001: MEAEKETEQE GNLTVMKLPV LPTKPNTHSH SMSSPIHSSI SASVPFSWEE EPGKPKQHST SSSSSSSSSP LTSYSSSPFE THKSLELPPR LHLLEKDGGS
101: VTKLHSPITV FDGPYSMTTS KRMDSPSFRM MVKGSADCYG SFRSDIDGDL EDLEVGSKQQ ENLSSGSLAV VKKRGRLGFF GFRRRRALKG KTEFGRGSYV
201: FPSSVDRESE YSRKEEEEEK EDKRFGYDDT DGISCSQSSR FCDVKISSIS RTGSFSTLPA PPSSSSKSHF WTNVYAGLKQ VVPWKSKKTT V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)