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AT4G00940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Dof-type zinc finger DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Dof-type zinc finger DNA-binding family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, Dof-type (InterPro:IPR003851); BEST Arabidopsis thaliana protein match is: Dof-type zinc finger DNA-binding family protein (TAIR:AT3G61850.3); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVPDeggNOG:ENOG41105QXEMBL:AB493666EMBL:AF013294EMBL:AL161491EMBL:CP002687EnsemblPlants:AT4G00940
EnsemblPlants:AT4G00940.1entrez:827952GeneID:827952Genevisible:Q9M161GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0046872Gramene:AT4G00940.1hmmpanther:PTHR31992hmmpanther:PTHR31992:SF8HOGENOM:HOG000239394InParanoid:Q9M161
InterPro:IPR003851KEGG:ath:AT4G00940OMA:RAQGHYGPaxDb:Q9M161Pfam:PF02701Pfam:Q9M161Pfscan:PS50884
PhylomeDB:Q9M161PIR:F85012PIR:T01552PRIDE:Q9M161PRO:PR:Q9M161ProDom:PD007478PROSITE:PS01361
PROSITE:PS50884Proteomes:UP000006548RefSeq:NP_192003.2scanprosite:PS01361STRING:3702.AT4G00940.1TAIR:AT4G00940UniGene:At.34496
UniProt:Q9M161
Coordinates (TAIR10) chr4:-:403320..404204
Molecular Weight (calculated) 33391.40 Da
IEP (calculated) 7.48
GRAVY (calculated) -1.14
Length 294 amino acids
Sequence (TAIR10)
(BLAST)
001: MDHHQYHHHD QYQHQMMTST NNNSYNTIVT TQPPPTTTTM DSTTATTMIM DDEKKLMTTM STRPQEPRNC PRCNSSNTKF CYYNNYSLAQ PRYLCKSCRR
101: YWTEGGSLRN VPVGGGSRKN KKLPFPNSST SSSTKNLPDL NPPFVFTSSA SSSNPSKTHQ NNNDLSLSFS SPMQDKRAQG HYGHFSEQVV TGGQNCLFQA
201: PMGMIQFRQE YDHEHPKKNL GFSLDRNEEE IGNHDNFVVN EEGSKMMYPY GDHEDRQQHH HVRHDDGNKK REGGSSNELW SGIILGGDSG GPTW
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)