AT4G00890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.883 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : proline-rich family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative glycosyl hydrolase family 10 protein (xylanase). | ||||||||||||||||||||
| Computational Description (TAIR10) |
proline-rich family protein; Has 74402 Blast hits to 44432 proteins in 1604 species: Archae - 100; Bacteria - 7075; Metazoa - 32308; Fungi - 16616; Plants - 5983; Viruses - 2030; Other Eukaryotes - 10290 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:374055..375350 | ||||||||||||||||||||
| Molecular Weight (calculated) | 47068.60 Da | ||||||||||||||||||||
| IEP (calculated) | 9.99 | ||||||||||||||||||||
| GRAVY (calculated) | -0.89 | ||||||||||||||||||||
| Length | 431 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFNNRQSRRR FRLGNLARLV QLRQSVSSQP PRRTVQETLS QSPPQSPLFH PQSPPEPKSL PLSPLSPKSK EEPESQTMTP LMSKHVKTHR NLLIQSPPKS 101: PPESTESQQQ FLASVPLRPL TTEPKTPLSP SSTLKATEES QSQPSPPLES IVETWFRPSP PTSTETGDET QLPIPPPQEA KTPPSSPSMM LNATEEFESQ 201: PKPPLLPSKS IDETRLRSPL MSQASSPPPL PSKSIDENET RSQSPPISPP KSDKQARSQT HSSPSPPPLL SPKASENHQS KSPMPPPSPT AQISLSSLKS 301: PIPSPATITA PPPPFSSPLS QTTPSPKPSL PQIEPNQIKS PSPKLTNTES HASPEQNLVK PDANLMNKIP AKNEVPKNRG TLEKKTEPMI MMFINSNVQG 401: FNTSLSLDSS SIDHKPGVHL TIDYDQSCDF S |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)