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AT4G00880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.991
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT2G46690.1); Has 1421 Blast hits to 1407 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1420; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1IZeggNOG:ENOG410YXA2EMBL:AF013294EMBL:AL161472EMBL:AY063950EMBL:AY096716EMBL:CP002687
EnsemblPlants:AT4G00880EnsemblPlants:AT4G00880.1entrez:827989GeneID:827989GO:GO:0009733Gramene:AT4G00880.1hmmpanther:PTHR31374
hmmpanther:PTHR31374:SF8HOGENOM:HOG000238628InterPro:IPR003676KEGG:ath:AT4G00880KO:K14488OMA:DRENTRFPfam:PF02519
PhylomeDB:O23089PIR:T01558Proteomes:UP000006548RefSeq:NP_567196.1TAIR:AT4G00880UniGene:At.27133UniProt:O23089
Coordinates (TAIR10) chr4:-:366692..367060
Molecular Weight (calculated) 14387.20 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.58
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MGNGDKVMSH WSFHIPRLHH HEHDHEKVPK GCLAVKVGQG EEQERFVIPV MYFNHPLFGQ LLKEAEEEFG FAQKGTITIP CHVEEFRYVQ GLIDRENTRF
101: LGTNLLDHHH HHHNHLIRCF RV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)