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AT4G00850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.993
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GRF1-interacting factor 3
Curator
Summary (TAIR10)
Arabidopsis thaliana GRF1-interacting factor 3 (GIF3) mRNA
Computational
Description (TAIR10)
GRF1-interacting factor 3 (GIF3); CONTAINS InterPro DOMAIN/s: SSXT (InterPro:IPR007726); BEST Arabidopsis thaliana protein match is: GRF1-interacting factor 2 (TAIR:AT1G01160.1); Has 414 Blast hits to 414 proteins in 93 species: Archae - 0; Bacteria - 2; Metazoa - 279; Fungi - 27; Plants - 81; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioGrid:13286eggNOG:ENOG41128HAeggNOG:KOG3227EMBL:AF013294EMBL:AF378866EMBL:AL161472EMBL:AY052732
EMBL:AY102641EMBL:CP002687EnsemblPlants:AT4G00850EnsemblPlants:AT4G00850.1entrez:827995GeneID:827995Genevisible:Q93VH6
GO:GO:0003713GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0008283GO:GO:0048366Gramene:AT4G00850.1
hmmpanther:PTHR23107HOGENOM:HOG000239707InParanoid:Q93VH6InterPro:IPR007726KEGG:ath:AT4G00850OMA:PQMIPMVPANTHER:PTHR23107
PaxDb:Q93VH6Pfam:PF05030Pfam:Q93VH6PhylomeDB:Q93VH6PIR:T01561PRIDE:Q93VH6PRO:PR:Q93VH6
ProteinModelPortal:Q93VH6Proteomes:UP000006548RefSeq:NP_567194.1STRING:3702.AT4G00850.1TAIR:AT4G00850tair10-symbols:GIF3UniGene:At.23576
UniProt:Q93VH6
Coordinates (TAIR10) chr4:+:357675..358928
Molecular Weight (calculated) 23771.30 Da
IEP (calculated) 7.03
GRAVY (calculated) -0.63
Length 223 amino acids
Sequence (TAIR10)
(BLAST)
001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)