suba logo
AT4G00820.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.938
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : IQ-domain 17
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
IQ-domain 17 (iqd17); CONTAINS InterPro DOMAIN/s: IQ calmodulin-binding region (InterPro:IPR000048); BEST Arabidopsis thaliana protein match is: IQ-domain 18 (TAIR:AT1G01110.2); Has 1332 Blast hits to 1131 proteins in 120 species: Archae - 0; Bacteria - 14; Metazoa - 172; Fungi - 58; Plants - 857; Viruses - 43; Other Eukaryotes - 188 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJ4WeggNOG:ENOG410YBUUEMBL:CP002687EnsemblPlants:AT4G00820EnsemblPlants:AT4G00820.1entrez:828002GeneID:828002
Gramene:AT4G00820.1hmmpanther:PTHR32295hmmpanther:PTHR32295:SF0InParanoid:F4JHN2InterPro:IPR000048InterPro:IPR025064KEGG:ath:AT4G00820
OMA:MHRAHHGPaxDb:F4JHN2Pfam:PF00612Pfam:PF13178Pfscan:PS50096PRIDE:F4JHN2PROSITE:PS50096
ProteinModelPortal:F4JHN2Proteomes:UP000006548RefSeq:NP_567191.2SMART:SM00015SMR:F4JHN2TAIR:AT4G00820tair10-symbols:iqd17
UniGene:At.28099UniProt:F4JHN2
Coordinates (TAIR10) chr4:+:349300..351307
Molecular Weight (calculated) 59998.80 Da
IEP (calculated) 10.91
GRAVY (calculated) -1.03
Length 534 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKKSGSSSS WLTAVKRAFR SPTKKEHNNN AHGNEVDEDE DKKKEKRRWL FRKSTNHDSP VKTSGVGKDA PAQKSTETTT IINPTVLSSV TEQRYDASTP
101: PATVSAASET HPPSTTKELP NLTRRTYTAR EDYAAVVIQT GFRGYLARRA LRALKGLVKL QALVRGHNVR KQAKMTLRCM QALVRVQSRV LDQRKRLSHD
201: GSRKSAFSDT QSVLESRYLQ EISDRRSMSR EGSSIAEDWD DRPHTIEEVK AMLQQRRDNA LRRESNNSIS QAFSHQVRRT RGSYSTGDEY EEERPKWLDR
301: WMASKPWDKR ASTDQRVPPV YKTVEIDTSQ PYLTRGNSRT GASPSRSQRP SSPSRTSHHY QQHNFSSATP SPAKSRPIQI RSASPRIQRD DRSAYNYTSN
401: TPSLRSNYSF TARSGYSVCT TTTTATNAAL PNYMAITESA KARIRSQSAP RQRPSTPEKE RISSARKRLS FPVPPLPQQM DGQSLRSPSF KSIGGSQLGA
501: LEQQSNYSSC CTESLGGGGE ISPASTSDYR RWLR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)