AT4G00810.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : 60S acidic ribosomal protein family | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
60S acidic ribosomal protein family; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation; LOCATED IN: cytosol, cytosolic ribosome, ribosome, nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813); BEST Arabidopsis thaliana protein match is: 60S acidic ribosomal protein family (TAIR:AT5G47700.2); Has 2192 Blast hits to 2192 proteins in 389 species: Archae - 91; Bacteria - 0; Metazoa - 852; Fungi - 488; Plants - 457; Viruses - 0; Other Eukaryotes - 304 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:346179..346957 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 11307.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 3.95 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.16 | ||||||||||||||||||||||||||||||||||||||||
| Length | 113 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSTVGELACS YAVMILEDEG IAITSDKIAT LVKAAGVEIE SYWPMLFAKM AEKRNVTDLI MNVGAGGGGG GAPVSAAAPA AAGGAAAAAP AKEEKKDEPA 101: EESDGDLGFG LFD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)