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AT4G00780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TRAF-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRAF-like family protein; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: TRAF-like family protein (TAIR:AT4G01390.1); Has 760 Blast hits to 681 proteins in 32 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 739; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AY065285EMBL:AY091337EMBL:CP002687EnsemblPlants:AT4G00780EnsemblPlants:AT4G00780.1
entrez:828009Gene3D:2.60.210.10GeneID:828009Gramene:AT4G00780.1hmmpanther:PTHR26379HOGENOM:HOG000015142IntAct:Q8VZ38
InterPro:IPR002083InterPro:IPR008974KEGG:ath:AT4G00780OMA:THGRDEFPfam:PF00917Pfscan:PS50144PhylomeDB:Q8VZ38
PROSITE:PS50144Proteomes:UP000006548RefSeq:NP_567187.1SMART:SM00061STRING:3702.AT4G00780.1SUPFAM:SSF49599TAIR:AT4G00780
UniGene:At.3777UniProt:Q8VZ38
Coordinates (TAIR10) chr4:+:334779..336120
Molecular Weight (calculated) 34325.10 Da
IEP (calculated) 7.42
GRAVY (calculated) -0.35
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRPIPIEEM VRLFKIRHTT SHLFKIDNFS LLKKHGIEKV ESSVFDLAGH KWKLSVYPNG HKNAKGTHVS MFLVNQVPVN DMPTYELLVV SQLERKWHTH
101: GRDEFDINPE PASEGFLRFI SLADLERKGF LIGDCCMFGV KFHGIEPANP GTAECFSLIE KPLNHKVTWM MSKFSSFNPG KAHQSNEFVV GTRKWRLEVH
201: PRGYMDEKDK SFSVYLSAEG FVNNAPMTKT YAKFKLRVLD QVSWNHVEES GLSWFDAEPS DQSGFADFMP LGKLNEPYLV KDKLYVGVEF EVVSTTYYC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)