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AT4G00760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pseudo-response regulator 8
Curator
Summary (TAIR10)
Encodes a response-regulator like protein.
Computational
Description (TAIR10)
pseudo-response regulator 8 (APRR8); FUNCTIONS IN: two-component response regulator activity, transcription regulator activity; INVOLVED IN: regulation of transcription, DNA-dependent, two-component signal transduction system (phosphorelay); LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: CheY-like (InterPro:IPR011006), Signal transduction response regulator, receiver domain (InterPro:IPR001789); BEST Arabidopsis thaliana protein match is: response regulator 2 (TAIR:AT4G16110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AF013294EMBL:AK229225EMBL:AL161472EMBL:CP002687
EnsemblPlants:AT4G00760EnsemblPlants:AT4G00760.1entrez:828011GeneID:828011
Genevisible:O23100GO:GO:0000160GO:GO:0005634GO:GO:0006351
GO:GO:0006355hmmpanther:PTHR26402hmmpanther:PTHR26402:SF534HOGENOM:HOG000120687
InterPro:IPR001789InterPro:IPR011006iPTMnet:O23100KEGG:ath:AT4G00760
ncoils:CoilOMA:EANNERKPaxDb:O23100Pfam:O23100
Pfam:PF00072Pfscan:PS50110PhylomeDB:O23100PIR:T01570
PRO:PR:O23100PROSITE:PS50110ProteinModelPortal:O23100Proteomes:UP000006548
RefSeq:NP_191985.3SMART:SM00448SUPFAM:SSF52172TAIR:AT4G00760
tair10-symbols:APRR8tair10-symbols:PRR8UniGene:At.47909UniProt:O23100
Coordinates (TAIR10) chr4:-:327236..328955
Molecular Weight (calculated) 37838.40 Da
IEP (calculated) 4.50
GRAVY (calculated) -0.76
Length 336 amino acids
Sequence (TAIR10)
(BLAST)
001: MIRKCGYKVV ATTRADDLPL IINNKDKKID LVLAEFRLIE MNKYELLEKI RSICEIPVVV SGAHVKDAIV ECLCRGAKLC LEKPLMENDF KILWQFTVSR
101: QRNFRSQIDI NPPEKNHSIT HTQSLGAELK KNNNNSEVET EDLDKYKDEL GQGNKRKERA DTDTGEHTEK NNGSDLGDQK KPKLLFADDL QNETLEAVPN
201: IEEANNERKA PTEIKKNGES SEKKSPELVC MEEELQKWSA ESFIDLTASV ENESQDPLES VGDSVGPHEI PLSPPESSNN NVAAQLQMPT HEALDEEVMQ
301: DGLSLSDLEV DLQEGHGSNK ELFDKIFTDL AKELKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)