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AT4G00690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : UB-like protease 1B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
UB-like protease 1B (ULP1B); FUNCTIONS IN: cysteine-type peptidase activity; INVOLVED IN: proteolysis; LOCATED IN: chloroplast; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Peptidase C48, SUMO/Sentrin/Ubl1 (InterPro:IPR003653); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT4G15880.1); Has 1373 Blast hits to 1372 proteins in 211 species: Archae - 0; Bacteria - 0; Metazoa - 603; Fungi - 267; Plants - 349; Viruses - 5; Other Eukaryotes - 149 (source: NCBI BLink).
Protein Annotations
EC:3.4.22.68eggNOG:COG5160eggNOG:KOG0778EMBL:AF058919EMBL:AL161472EMBL:CP002687EnsemblPlants:AT4G00690
EnsemblPlants:AT4G00690.1entrez:828036GeneID:828036Genevisible:O65278GO:GO:0008234Gramene:AT4G00690.1hmmpanther:PTHR12606
hmmpanther:PTHR12606:SF39InParanoid:O65278InterPro:IPR003653KEGG:ath:AT4G00690KO:K08592MEROPS:C48.A01PaxDb:O65278
Pfam:O65278Pfam:PF02902Pfscan:PS50600PIR:T01233PROSITE:PS50600ProteinModelPortal:O65278Proteomes:UP000006548
Reactome:R-ATH-3065679RefSeq:NP_191978.3SMR:O65278STRING:3702.AT4G00690.1SUPFAM:SSF54001TAIR:AT4G00690tair10-symbols:ULP1B
UniGene:At.50688UniProt:O65278
Coordinates (TAIR10) chr4:+:281313..283129
Molecular Weight (calculated) 40520.90 Da
IEP (calculated) 10.18
GRAVY (calculated) -0.48
Length 348 amino acids
Sequence (TAIR10)
(BLAST)
001: MALVPKIRNR TISDKPVSSS CTRTSSFRQR LLASCKRFLR FKLLVRASSV SLKKKAARCS QSQQVVKHND DRIEEHSSSN RGFKDGNNFL VSSTETKKLV
101: AFCGEPFQPL NEEEVALVNS ALSKRNRKKI LVSHKNSNID ISGETLQCLR PNQWLNDDVT NLYLELLKER QTRDPQKYFK CHFFNTFFYV KLVSGSGYNY
201: KAVSRWTTKR KLGYDLIDCD IIFVPIHIDI HWTLGVINNR ERKFVYLDSL FTGVGHTILN AMAKYLVDEV KQKSQKNIDV SSWGMEYVEE RPQQQNGYDC
301: GMFMLKYIDF YSRGLSLQFS QVIRDVIKKD MPYFRLRTAK EILRLRAD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)