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AT4G00680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : actin depolymerizing factor 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
actin depolymerizing factor 8 (ADF8); FUNCTIONS IN: actin binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Actin-binding, cofilin/tropomyosin type (InterPro:IPR002108); BEST Arabidopsis thaliana protein match is: actin depolymerizing factor 11 (TAIR:AT1G01750.1); Has 1612 Blast hits to 1604 proteins in 270 species: Archae - 0; Bacteria - 5; Metazoa - 759; Fungi - 157; Plants - 515; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41122P5eggNOG:KOG1735EMBL:AF058919EMBL:AK220571EMBL:AL161472EMBL:AY086598EMBL:BT024819
EMBL:CP002687EnsemblPlants:AT4G00680EnsemblPlants:AT4G00680.1entrez:828037Gene3D:3.40.20.10GeneID:828037Genevisible:Q570Y6
GO:GO:0015629GO:GO:0030042Gramene:AT4G00680.1hmmpanther:PTHR11913hmmpanther:PTHR11913:SF30HOGENOM:HOG000039697InParanoid:Q570Y6
InterPro:IPR002108InterPro:IPR017904InterPro:IPR029006KEGG:ath:AT4G00680KO:K05765OMA:QGASSTCPANTHER:PTHR11913
PaxDb:Q570Y6Pfam:PF00241Pfam:Q570Y6Pfscan:PS51263PhylomeDB:Q570Y6PIR:T01232PRIDE:Q570Y6
PRO:PR:Q570Y6PROSITE:PS51263ProteinModelPortal:Q570Y6Proteomes:UP000006548RefSeq:NP_567182.1SMART:SM00102SMR:Q570Y6
STRING:3702.AT4G00680.1SUPFAM:SSF55753TAIR:AT4G00680tair10-symbols:ADF8UniGene:At.34524UniProt:Q570Y6
Coordinates (TAIR10) chr4:-:279780..280608
Molecular Weight (calculated) 16318.30 Da
IEP (calculated) 4.87
GRAVY (calculated) -0.63
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSASGMHV NDECKIKFLE LKAKRTYRFI VFKIDEKAQQ VQIEKLGNPE ETYDDFTSSI PDDECRYAVY DFDFTTEDNC QKSKIFFIAW SPDTSRVRSK
101: MLYASSKDRF KREMEGIQVE LQATDPSEMS LDIIKGRLNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)