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AT4G00560.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.908
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: dTDP-4-dehydrorhamnose reductase activity, binding, catalytic activity; INVOLVED IN: dTDP-rhamnose biosynthetic process, extracellular polysaccharide biosynthetic process, metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), dTDP-4-dehydrorhamnose reductase (InterPro:IPR005913); Has 7761 Blast hits to 7761 proteins in 1842 species: Archae - 350; Bacteria - 5037; Metazoa - 116; Fungi - 124; Plants - 45; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1091eggNOG:ENOG410IQ9FEMBL:CP002687EnsemblPlants:AT4G00560
EnsemblPlants:AT4G00560.1entrez:827978ExpressionAtlas:F4JHD6Gene3D:3.40.50.720
GeneID:827978Gramene:AT4G00560.1hmmpanther:PTHR10491hmmpanther:PTHR10491:SF7
InterPro:IPR005913InterPro:IPR016040InterPro:IPR029903PANTHER:PTHR10491
PaxDb:F4JHD6Pfam:PF04321PhylomeDB:F4JHD6PRIDE:F4JHD6
ProteinModelPortal:F4JHD6Proteomes:UP000006548Reactome:R-ATH-156581RefSeq:NP_191965.2
SMR:F4JHD6STRING:3702.AT4G00560.4SUPFAM:SSF51735TAIR:AT4G00560
UniGene:At.34536UniGene:At.34538UniProt:F4JHD6
Coordinates (TAIR10) chr4:-:240798..242267
Molecular Weight (calculated) 36153.40 Da
IEP (calculated) 6.35
GRAVY (calculated) -0.07
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKKTKVLIV GGTGYLGQHL LQAFAGNYGG ECELYDVAFT HHSSPLPARL LDAFPHSPAF PVDLKSGLGL NSISQDFRQP DVVVNCAALS VPRACEQDPD
101: SAMSINVPTS LVNWLSSFET NKTLLIHLST DQVYQGVKSF YKEEDETVAV NVYGKSKVAA ELLIKDKCQS FAILRSSIIF GPQTVSPLPK TLPIQWIDSS
201: LKKGDTVDFF HDEFRCPIYV KDLVNITFKL IDRWVSDDKQ MRLVLNAGGP ERLSRVQMAQ MVAEVRGYDL SLIKHVSASS IDRGVVSPAD ISMDITKLIH
301: TLELSPTSFK EGVRLTLDSE SHSHMLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)