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AT4G00480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus
Computational
Description (TAIR10)
ATMYC1; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G63650.3); Has 1473 Blast hits to 1082 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1458; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioGrid:13256DIP:DIP-38469NeggNOG:ENOG410IKXPeggNOG:ENOG410Z2WKEMBL:AF058919EMBL:AF251697EMBL:AL161472
EMBL:CP002687EMBL:D83511EnsemblPlants:AT4G00480EnsemblPlants:AT4G00480.1entrez:827965ExpressionAtlas:Q8W2F1Gene3D:4.10.280.10
GeneID:827965Genevisible:Q8W2F1GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355hmmpanther:PTHR11514
hmmpanther:PTHR11514:SF38HOGENOM:HOG000237985InParanoid:Q8W2F1IntAct:Q8W2F1InterPro:IPR011598InterPro:IPR025610ncoils:Coil
PaxDb:Q8W2F1Pfam:PF14215Pfam:Q8W2F1Pfscan:PS50888PhylomeDB:Q8W2F1PIR:T01212PRIDE:Q8W2F1
PRO:PR:Q8W2F1PROSITE:PS50888ProteinModelPortal:Q8W2F1Proteomes:UP000006548RefSeq:NP_191957.2SMART:SM00353SMR:Q8W2F1
STRING:3702.AT4G00480.2SUPFAM:SSF47459TAIR:AT4G00480tair10-symbols:ATMYC1tair10-symbols:myc1UniGene:At.28313UniProt:C0SVG1
UniProt:Q8W2F1
Coordinates (TAIR10) chr4:-:217106..219684
Molecular Weight (calculated) 59991.10 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.58
Length 526 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLTMADGVE AAAGRSKRQN SLLRKQLALA VRSVQWSYAI FWSSSLTQPG VLEWGEGCYN GDMKKRKKSY ESHYKYGLQK SKELRKLYLS MLEGDSGTTV
101: STTHDNLNDD DDNCHSTSMM LSPDDLSDEE WYYLVSMSYV FSPSQCLPGR ASATGETIWL CNAQYAENKL FSRSLLARSA SIQTVVCFPY LGGVIELGVT
201: ELISEDHNLL RNIKSCLMEI SAHQDNDDEK KMEIKISEEK HQLPLGISDE DLHYKRTIST VLNYSADRSG KNDKNIRHRQ PNIVTSEPGS SFLRWKQCEQ
301: QVSGFVQKKK SQNVLRKILH DVPLMHTKRM FPSQNSGLNQ DDPSDRRKEN EKFSVLRTMV PTVNEVDKES ILNNTIKYLQ ELEARVEELE SCMGSVNFVE
401: RQRKTTENLN DSVLIEETSG NYDDSTKIDD NSGETEQVTV FRDKTHLRVK LKETEVVIEV RCSYRDYIVA DIMETLSNLH MDAFSVRSHT LNKFLTLNLK
501: AKFRGAAVAS VGMIKRELRR VIGDLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)