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AT4G00400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.751
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : glycerol-3-phosphate acyltransferase 8
Curator
Summary (TAIR10)
Involved in cutin assembly. Is functionally redundant with GPAT4.
Computational
Description (TAIR10)
glycerol-3-phosphate acyltransferase 8 (GPAT8); FUNCTIONS IN: glycerol-3-phosphate O-acyltransferase activity, acyltransferase activity; INVOLVED IN: metabolic process, cutin biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: glycerol-3-phosphate acyltransferase 4 (TAIR:AT1G01610.1); Has 380 Blast hits to 369 proteins in 27 species: Archae - 0; Bacteria - 6; Metazoa - 8; Fungi - 0; Plants - 360; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT4G00400-MONOMERBioGrid:13429BRENDA:2.3.1.15EC:2.3.1.15eggNOG:ENOG410IV8KeggNOG:ENOG4111C4NEMBL:AF013293
EMBL:AF195115EMBL:AK228870EMBL:AL161471EMBL:BT015813EMBL:CP002687EnsemblPlants:AT4G00400EnsemblPlants:AT4G00400.1
entrez:828140GeneID:828140Genevisible:Q5XF03GO:GO:0004366GO:GO:0005783GO:GO:0010143GO:GO:0016020
GO:GO:0016021GO:GO:0016024GO:GO:0016311GO:GO:0016791GO:GO:0090447Gramene:AT4G00400.1gramene_pathway:2.3.1.15
gramene_pathway:2.3.1.51gramene_pathway:PWY-5667gramene_pathway:PWY0-1319gramene_pathway:TRIGLSYN-PWYhmmpanther:PTHR15486hmmpanther:PTHR15486:SF27HOGENOM:HOG000237722
InParanoid:Q5XF03InterPro:IPR002123iPTMnet:Q5XF03KEGG:ath:AT4G00400KO:K13508OMA:MVEAFVKPaxDb:Q5XF03
Pfam:PF01553Pfam:Q5XF03PhylomeDB:Q5XF03PIR:T01530PIR:T01531PRIDE:Q5XF03PRO:PR:Q5XF03
ProteinModelPortal:Q5XF03Proteomes:UP000006548RefSeq:NP_191950.2SMART:SM00563STRING:3702.AT4G00400.1SUPFAM:0039877TAIR:AT4G00400
tair10-symbols:AtGPAT8tair10-symbols:GPAT8TMHMM:TMhelixUniGene:At.34564UniPathway:UPA00557UniProt:Q5XF03
Coordinates (TAIR10) chr4:-:174312..176734
Molecular Weight (calculated) 55870.70 Da
IEP (calculated) 9.31
GRAVY (calculated) 0.07
Length 500 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPEKKSQNF PPITECRDGE YDSIAADLDG TLLLSRSSFP YFMLVAVEAG SLLRGLILLL SLPFVIISYL FVSESLGIQI LIFISFAGLK IRDIELVSRA
101: VLPRFYAADV RKDSFEVFDK CKRKVVVTAN PIVMVEAFVK DYLGGDKVLG TEIEVNPKTN RATGFVKKPG VLVGDLKRLA ILKEFGNESP DLGLGDRTSD
201: HDFMSLCKKG YMVHATKSAT TIPKERLKNR IVFHDGRLAQ RPTPLNAIIT YLWLPFGFIL SIIRVYFNLP LPERFVRYTY EMLGIHLTIR GHRPPPPSPG
301: TLGNLYVLNH RTALDPIIVA IALGRKICCV TYSVSRLSLM LSPIPAVALT RDRATDAANM RKLLEKGDLV ICPEGTTCRE EYLLRFSALF AELSDRIVPV
401: AMNCKQGMFN GTTVRGVKFW DPYFFFMNPR PSYEATFLDR LPEEMTVNGG GKTPIEVANY VQKVIGAVLG FECTELTRKD KYLLLGGNDG KVESINNTKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)