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AT4G00335.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.871
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : RING-H2 finger B1A
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING-H2 finger B1A (RHB1A); FUNCTIONS IN: zinc ion binding; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G41350.1); Has 5425 Blast hits to 5419 proteins in 245 species: Archae - 0; Bacteria - 0; Metazoa - 1535; Fungi - 417; Plants - 2568; Viruses - 6; Other Eukaryotes - 899 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41121N2eggNOG:KOG0800EMBL:AK228408EMBL:BT024583EMBL:CP002687EnsemblPlants:AT4G00335EnsemblPlants:AT4G00335.1
EnsemblPlants:AT4G00335.2entrez:828093ExpressionAtlas:Q2HIJ8Gene3D:3.30.40.10GeneID:828093GO:GO:0008270Gramene:AT4G00335.1
Gramene:AT4G00335.2hmmpanther:PTHR22937hmmpanther:PTHR22937:SF24HOGENOM:HOG000005881InterPro:IPR001841InterPro:IPR013083OMA:YYCPESF
Pfam:PF13639Pfscan:PS50089PhylomeDB:Q2HIJ8PROSITE:PS50089Proteomes:UP000006548RefSeq:NP_567171.1RefSeq:NP_974488.1
SMART:SM00184SMR:Q2HIJ8STRING:3702.AT4G00335.1SUPFAM:SSF57850TAIR:AT4G00335tair10-symbols:RHB1AUniGene:At.10854
UniProt:Q2HIJ8
Coordinates (TAIR10) chr4:+:146866..147962
Molecular Weight (calculated) 20954.70 Da
IEP (calculated) 4.26
GRAVY (calculated) -0.24
Length 190 amino acids
Sequence (TAIR10)
(BLAST)
001: MGGCCSSSRK SHLVGTPVYY YCPESFEELV PSGTRAGVGS AFTTGLLVDI GLETSIPDTF CAPAPLPYDL LLGRPQCTDS ESIKGRMSGS SFETLATCED
101: LGESDCKTLA SSVILSPRKS DFSKHQGLKI LVDEEEDCCP ICFEDYDVEN PRLTTKCEHE FHLSCLLEWI ERSDRCPICD KEVVFDDRLN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)