AT4G00300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:endoplasmic reticulum 0.601 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : fringe-related protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
fringe-related protein; CONTAINS InterPro DOMAIN/s: Malectin/receptor-like protein kinase (InterPro:IPR021720), Protein of unknown function DUF604 (InterPro:IPR006740); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF604) (TAIR:AT1G01570.1); Has 958 Blast hits to 946 proteins in 99 species: Archae - 0; Bacteria - 2; Metazoa - 87; Fungi - 151; Plants - 707; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:126509..130126 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 88865.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.00 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||
| Length | 785 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGDQKTLSYD KSNKPFYSSS SSPCSFTAIV VFLIFVSYLL YSFSFISFLN PYSPSKSPNS LLVPVIRLGS GQTPEEQTEL KHIVFGIAAS SDLWKHRREY 101: VKTWWKPNGV MNGAVWLDKP INDTVSSSSA LPQIRISSDT SSFKYRYRNG HRSAIRITRI VSETVRMLNG TEAERNVRWV VMGDDDTVFF TENLVRVLRK 201: YDHKQFYYIG APSESHLQNL HQFSYGMAYG GGGFAISYPL AKVLEKMQDR CIERYSDLYG SDDRIHACMA ELGVPLTKEV GFHQFDVYGN LLGLLSVHPQ 301: APIVSIHHLD VVDPIFPKTN RVNALKKLMI PAKLDSASLV QQSVCYDKSH QWTMSISWGY TVQITRTYMP ARMMEVPTRT FNDWHLRSDF TNLAFNTRPV 401: TWTDCQRPRV FYFSHAFSNS SSSDTTTISQ YLRHDEWYPK CEWGIADPSE INQIFVYKKP TPDRWSKVVI RFVPSKDSNF AFVNAIEVIS APKDLIGDVA 501: TSVSHDGTEK FNGLAKQAME VVYRVNVGGR KVTPFNDTLW RTWVTDEGFL KTGDGSSEKS YFTGRIKYRR GGASREVGPD NVYNTARVGK RSNGLVDMSW 601: GFKVNVGYKY LIRMHFCDIA SKSLGRLYFN VYINGNLAYE DFDISYAADN VLASPYYIDF VVDATADDNN PSGSSITVSV GPSNKTSVDG NGVDAILNGV 701: EIMKMNNSMG SLDGYVSTEM ILSTCPNRRN LSIFIAMLAF MCIFMSFYIV TQRKRVKDQY GWTKLSMDVL EDNSKSGNQF TARKA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)