suba logo
AT4G00270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : DNA-binding storekeeper protein-related transcriptional regulator
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA-binding storekeeper protein-related transcriptional regulator; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF573 (InterPro:IPR007592); BEST Arabidopsis thaliana protein match is: DNA-binding storekeeper protein-related transcriptional regulator (TAIR:AT2G25650.1); Has 282 Blast hits to 277 proteins in 23 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 2; Plants - 255; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JTI3eggNOG:ENOG41107TPEMBL:AF361590EMBL:AY074837
EMBL:CP002687EnsemblPlants:AT4G00270EnsemblPlants:AT4G00270.1entrez:827164
GeneID:827164GO:GO:0003677GO:GO:0006355Gramene:AT4G00270.1
hmmpanther:PTHR31662hmmpanther:PTHR31662:SF1InterPro:IPR007592KEGG:ath:AT4G00270
ncoils:CoilOMA:HMERIDRPfam:PF04504PhylomeDB:Q9ASZ1
Proteomes:UP000006548RefSeq:NP_567163.1STRING:3702.AT4G00270.1TAIR:AT4G00270
UniGene:At.28698UniProt:Q9ASZ1
Coordinates (TAIR10) chr4:-:117477..118468
Molecular Weight (calculated) 34059.80 Da
IEP (calculated) 6.03
GRAVY (calculated) -0.95
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MVTPKQIDFS SCVGADNSNG TLSHRRSPRN IPSSKRAASV AEEETMKKKM KMKKKKKKLD PPLIVRIWNE EDELSILKGL VDYRAKTGFN PKIDWDAFCS
101: FLGSSIVERF SKDQVLSKIR KLKRRFHVHS EKINQGNDPK FTRSSDSEAF GFSSMIWGQG DDDGMDKEHE VNGNGAAENR TNESGEEMLK EHEEEVANTE
201: LLNENGAAKT TENGTSSGKE RHDEDNDDDD ELCAVQDAFE AVMSQGLSGY QKKLQLEKLM NLGNGKRREL SDEWKALCVE ETRFNIKKLR FSAKLAEAAN
301: DS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)