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AT4G00210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : LOB domain-containing protein 31
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOB domain-containing protein 31 (LBD31); CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LOB domain-containing protein 19 (TAIR:AT2G45410.1); Has 416 Blast hits to 414 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 416; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYBHeggNOG:ENOG4111981EMBL:AB473855EMBL:AF069299EMBL:AL161471EMBL:CP002687EnsemblPlants:AT4G00210
EnsemblPlants:AT4G00210.1entrez:828114GeneID:828114Gramene:AT4G00210.1hmmpanther:PTHR31529hmmpanther:PTHR31529:SF7HOGENOM:HOG000237548
InParanoid:O81322InterPro:IPR004883KEGG:ath:AT4G00210OMA:NNSRTEAPaxDb:O81322Pfam:O81322Pfam:PF03195
Pfscan:PS50891PhylomeDB:O81322PIR:T01349PRIDE:O81322PRO:PR:O81322PROSITE:PS50891Proteomes:UP000006548
RefSeq:NP_191932.4STRING:3702.AT4G00210.1TAIR:AT4G00210tair10-symbols:LBD31UniGene:At.65311UniProt:O81322
Coordinates (TAIR10) chr4:-:85693..86888
Molecular Weight (calculated) 23808.10 Da
IEP (calculated) 5.60
GRAVY (calculated) -0.19
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MSGSTTGCGG PCGACKFLRR KCVADCVFAP YFDSVEGTSH FTAVHKVFGA SNASKLLMMI PASRRLDAVV TLTYEALARL RDPVYGCVGH IFALQHQVMN
101: LQAELAYVQT QLSTLQGLPP PNSQNNSRTE AASSSNVPLI SSVDSKDNMS SSSSHIPCMS QQQEQEQPKE AIEVPTESVD LSTFFGLENP VDEDGDLNAL
201: AREFFTKYLT GGKYRPSSLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)