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AT4G00200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AT hook motif DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT-hook motif nuclear-localized protein 1 (TAIR:AT4G12080.1); Has 772 Blast hits to 768 proteins in 34 species: Archae - 0; Bacteria - 6; Metazoa - 13; Fungi - 0; Plants - 749; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKZReggNOG:ENOG410YFD3EMBL:AF069299EMBL:AK228631EMBL:AL161471EMBL:BR000343EMBL:BT023416
EMBL:CP002687EnsemblPlants:AT4G00200EnsemblPlants:AT4G00200.1entrez:828162GeneID:828162Genevisible:Q4V3E0GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT4G00200.1hmmpanther:PTHR31500hmmpanther:PTHR31500:SF15HOGENOM:HOG000116506
InterPro:IPR005175KEGG:ath:AT4G00200OMA:FMETENQPaxDb:Q4V3E0Pfam:PF03479Pfam:Q4V3E0Pfscan:PS51742
PhylomeDB:Q4V3E0PIR:T01348PRIDE:Q4V3E0PRO:PR:Q4V3E0PROSITE:PS51742ProteinModelPortal:Q4V3E0Proteomes:UP000006548
RefSeq:NP_191931.2SMR:Q4V3E0SUPFAM:SSF117856TAIR:AT4G00200UniGene:At.34588UniProt:Q4V3E0
Coordinates (TAIR10) chr4:-:82653..84104
Molecular Weight (calculated) 33153.40 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.38
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: METSDRISPG GGIGAEVPSA YHMAPRPSDS PANQFMGLSL PPMEAPMPSS GEASGKKRRG RPRKYEANGA PLPSSSVPLV KKRVRGKLNG FDMKKMHKTI
101: GFHSSGERFG VGGGVGGGVG SNFTPHVITV NTGEDITMRI ISFSQQGPRA ICILSANGVI SNVTLRQPDS CGGTLTYEGR FEILSLSGSF METENQGSKG
201: RSGGMSVSLA GPDGRVVGGG VAGLLIAATP IQVVVGSFIT SDQQDHQKPR KQRVEHAPAA VMSVPPPPSP PPPAASVFSP TNPDREQPPS SFGISSWTNG
301: QDMPRNSATD INISLPVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)