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AT4G00150.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GRAS family transcription factor
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HAIRY MERISTEM 3 (HAM3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor GRAS (InterPro:IPR005202); BEST Arabidopsis thaliana protein match is: GRAS family transcription factor (TAIR:AT2G45160.1); Has 2283 Blast hits to 2233 proteins in 293 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 2281; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:13497eggNOG:ENOG410II7AeggNOG:ENOG410YANMEMBL:AF036303EMBL:AF069299EMBL:AF462831EMBL:AL161471
EMBL:AY133537EMBL:CP002687EMBL:EU550755EMBL:EU550756EMBL:EU550757EMBL:EU550758EMBL:EU550759
EMBL:EU550760EMBL:EU550761EMBL:EU550762EMBL:EU550763EMBL:EU550764EMBL:EU550765EMBL:EU550766
EMBL:EU550767EMBL:EU550768EMBL:EU550769EMBL:EU550770EMBL:EU550771EMBL:EU550772EMBL:EU550773
EMBL:EU550774EMBL:EU550775EMBL:EU550776EMBL:EU550777EnsemblPlants:AT4G00150EnsemblPlants:AT4G00150.1entrez:828208
GeneID:828208Genevisible:O81316GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0007623
GO:GO:0010492GO:GO:0030154GO:GO:0048768GO:GO:0051301Gramene:AT4G00150.1hmmpanther:PTHR31636hmmpanther:PTHR31636:SF11
HOGENOM:HOG000239326InParanoid:O81316IntAct:O81316InterPro:IPR005202KEGG:ath:AT4G00150OMA:WQRTELVPaxDb:O81316
Pfam:O81316Pfam:PF03514Pfscan:PS50985PhylomeDB:O81316PIR:T01343PIR:T51237PRIDE:O81316
PRO:PR:O81316PROSITE:PS50985ProteinModelPortal:O81316Proteomes:UP000006548RefSeq:NP_191926.1STRING:3702.AT4G00150.1TAIR:AT4G00150
tair10-symbols:ATHAM3tair10-symbols:HAM3tair10-symbols:LOM3UniGene:At.3732UniGene:At.67226UniProt:O81316
Coordinates (TAIR10) chr4:-:57429..59105
Molecular Weight (calculated) 61171.10 Da
IEP (calculated) 5.66
GRAVY (calculated) -0.18
Length 558 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLPFEEFQG KGISCFSSFS SSFPQPPSSP LLSHRKARGG EEEEEEVPAA EPTSVLDSLI SPTSSSTVSS SHGGNSAVGG GGDATTDEQC GAIGLGDWEE
101: QVPHDHEQSI LGLIMGDSTD PSLELNSILQ TSPTFHDSDY SSPGFGVVDT GFGLDHHSVP PSHVSGLLIN QSQTHYTQNP AAIFYGHHHH TPPPAKRLNP
201: GPVGITEQLV KAAEVIESDT CLAQGILARL NQQLSSPVGK PLERAAFYFK EALNNLLHNV SQTLNPYSLI FKIAAYKSFS EISPVLQFAN FTSNQALLES
301: FHGFHRLHII DFDIGYGGQW ASLMQELVLR DNAAPLSLKI TVFASPANHD QLELGFTQDN LKHFASEINI SLDIQVLSLD LLGSISWPNS SEKEAVAVNI
401: SAASFSHLPL VLRFVKHLSP TIIVCSDRGC ERTDLPFSQQ LAHSLHSHTA LFESLDAVNA NLDAMQKIER FLIQPEIEKL VLDRSRPIER PMMTWQAMFL
501: QMGFSPVTHS NFTESQAECL VQRTPVRGFH VEKKHNSLLL CWQRTELVGV SAWRCRSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)