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AT4G00120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
INDEHISCENT (IND); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: polar nucleus fusion, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT5G09750.1); Has 2280 Blast hits to 2276 proteins in 91 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2280; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:13202eggNOG:ENOG410IYQ7eggNOG:ENOG410YMAUEMBL:AF069299
EMBL:AF488578EMBL:AL161471EMBL:BT029443EMBL:CP002687
EnsemblPlants:AT4G00120EnsemblPlants:AT4G00120.1entrez:827911Gene3D:4.10.280.10
GeneID:827911GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0010197Gramene:AT4G00120.1
hmmpanther:PTHR12565hmmpanther:PTHR12565:SF125HOGENOM:HOG000113070InParanoid:O81313
IntAct:O81313InterPro:IPR011598KEGG:ath:AT4G00120OMA:AIRYTKF
PaxDb:O81313Pfam:O81313Pfam:PF00010Pfscan:PS50888
PhylomeDB:O81313PIR:T01340PRIDE:O81313PRO:PR:O81313
PROSITE:PS50888ProteinModelPortal:O81313Proteomes:UP000006548RefSeq:NP_191923.1
SMART:SM00353SMR:O81313STRING:3702.AT4G00120.1SUPFAM:SSF47459
TAIR:AT4G00120tair10-symbols:EDA33tair10-symbols:GT140tair10-symbols:IND
tair10-symbols:IND1UniGene:At.34598UniProt:O81313
Coordinates (TAIR10) chr4:-:42601..43197
Molecular Weight (calculated) 22950.70 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.79
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MENGMYKKKG VCDSCVSSKS RSNHSPKRSM MEPQPHHLLM DWNKANDLLT QEHAAFLNDP HHLMLDPPPE TLIHLDEDEE YDEDMDAMKE MQYMIAVMQP
101: VDIDPATVPK PNRRNVRISD DPQTVVARRR RERISEKIRI LKRIVPGGAK MDTASMLDEA IRYTKFLKRQ VRILQPHSQI GAPMANPSYL CYYHNSQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)