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AT4G00100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24124904 (2013): plastid
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:15496452 (2005): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ribosomal protein S13A
Curator
Summary (TAIR10)
Encodes a cytoplasmic ribosomal protein S13 homologue involved in early leaf development
Computational
Description (TAIR10)
ribosomal protein S13A (RPS13A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, trichome morphogenesis, leaf morphogenesis, cytokinesis by cell plate formation; LOCATED IN: cytosolic small ribosomal subunit, nucleolus, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S13/S15, N-terminal (InterPro:IPR012606), Ribosomal protein S15 (InterPro:IPR000589), S15/NS1, RNA-binding (InterPro:IPR009068); BEST Arabidopsis thaliana protein match is: Ribosomal protein S13/S15 (TAIR:AT3G60770.1); Has 1100 Blast hits to 1100 proteins in 416 species: Archae - 259; Bacteria - 0; Metazoa - 343; Fungi - 146; Plants - 139; Viruses - 0; Other Eukaryotes - 213 (source: NCBI BLink).
Protein Annotations
BioGrid:13456eggNOG:COG0184eggNOG:KOG0400EMBL:AB031739
EMBL:AF069299EMBL:AF370471EMBL:AL161471EMBL:AY057544
EMBL:AY088038EMBL:BT006543EMBL:CP002687EMBL:Z29915
EnsemblPlants:AT4G00100EnsemblPlants:AT4G00100.1entrez:828167GeneID:828167
Genevisible:P59224GO:GO:0000911GO:GO:0003735GO:GO:0005730
GO:GO:0005783GO:GO:0006412GO:GO:0009965GO:GO:0010090
GO:GO:0016020GO:GO:0022627GO:GO:0070181Gramene:AT4G00100.1
HAMAP:MF_01343_Ahmmpanther:PTHR11885HOGENOM:HOG000180723InParanoid:P59224
IntAct:P59224InterPro:IPR000589InterPro:IPR009068InterPro:IPR012606
InterPro:IPR023029KEGG:ath:AT4G00100KO:K02953OMA:WHLVKKA
PaxDb:P59224Pfam:P59224Pfam:PF00312Pfam:PF08069
PhylomeDB:P59224PIR:T01338PIR:T47888PRIDE:P59224
PRO:PR:P59224PROSITE:PS00362ProteinModelPortal:P59224Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695
Reactome:R-ATH-72702Reactome:R-ATH-72706Reactome:R-ATH-975956Reactome:R-ATH-975957
RefSeq:NP_567151.1scanprosite:PS00362SMART:SM01386SMART:SM01387
SMR:P59224STRING:3702.AT4G00100.1SUPFAM:SSF47060TAIR:AT4G00100
tair10-symbols:ATRPS13Atair10-symbols:PFL2tair10-symbols:RPS13tair10-symbols:RPS13A
UniGene:At.24982UniProt:P59224
Coordinates (TAIR10) chr4:+:37172..38123
Molecular Weight (calculated) 17086.10 Da
IEP (calculated) 11.07
GRAVY (calculated) -0.50
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRMHSRGKG ISASALPYKR SSPSWLKTTS QDVDESICKF AKKGLTPSQI GVILRDSHGI PQVKSVTGSK ILRILKAHGL APEIPEDLYH LIKKAVAIRK
101: HLERNRKDKD SKFRLILVES RIHRLARYYK KTKKLPPVWK YESTTASTLV A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)