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AT4G00090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22923678 (2012): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: nucleotide binding; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat, conserved site (InterPro:IPR019775), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: periodic tryptophan protein 2 (TAIR:AT1G15440.2); Has 19942 Blast hits to 11235 proteins in 520 species: Archae - 42; Bacteria - 5638; Metazoa - 5982; Fungi - 4099; Plants - 1742; Viruses - 0; Other Eukaryotes - 2439 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410INQZeggNOG:ENOG410XPR7EMBL:AY056436EMBL:AY143971EMBL:CP002687EnsemblPlants:AT4G00090EnsemblPlants:AT4G00090.1
entrez:828179Gene3D:2.130.10.10GeneID:828179GO:GO:0005783GO:GO:0016021Gramene:AT4G00090.1hmmpanther:PTHR22847
hmmpanther:PTHR22847:SF358HOGENOM:HOG000240577InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775KEGG:ath:AT4G00090
OMA:CFAPNSEPfam:PF00400Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q93ZN5PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_567150.1scanprosite:PS00678SMART:SM00320SMR:Q93ZN5STRING:3702.AT4G00090.1
SUPFAM:SSF50978TAIR:AT4G00090TMHMM:TMhelixUniGene:At.3728UniProt:Q93ZN5
Coordinates (TAIR10) chr4:+:34234..36594
Molecular Weight (calculated) 46553.40 Da
IEP (calculated) 8.63
GRAVY (calculated) -0.28
Length 430 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSVLVVGIA SVILGALIAV LFFGSYFRKR TSEVQSMAKA EPQDPIRNPK SNHPAPKKNH PKSQASDKNQ NKRHHPLDLN TLKGHGDAVT GLCFSSDGKS
101: LATACADGVI RVFKLDDASS KSFKFLRINL PAGGHPTAVA FADDASSIVV ACHHMSGSSL YMYGEDKQKD QQGKLPLPSI KWDHHHIHEK RSVLTISGAT
201: ATYGTADGSV VIASCSEGTD IVLWHGKTGR NLGHVDTNQL KNHMAAVSPN GRFLAAAAFT ADVKVWEIVY QKDGSVKEVS RVMQLKGHKS AVTWLCFSPN
301: SEQIITASKD GSIRVWNINV RYHLDEDPKT LKVFPIPLCD SGGNPLHYDR LSLCPEGKIL AASHGSTLQW LCAETGNVLD TAEKAHEGDI TCISWAPKAI
401: TVGERHAMVL GTSGDDKKVK LWEAPKSQSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)