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AT4G00050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unfertilized embryo sac 10 (UNE10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: double fertilization forming a zygote and endosperm, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: phytochrome-interacting factor7 (TAIR:AT5G61270.1); Has 3766 Blast hits to 3760 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 365; Fungi - 50; Plants - 3342; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Protein Annotations
BioGrid:13464eggNOG:ENOG410IGJYeggNOG:ENOG4111B0GEMBL:AF069299EMBL:AF488561EMBL:AK117229EMBL:AL161471
EMBL:BT025971EMBL:CP002687EnsemblPlants:AT4G00050EnsemblPlants:AT4G00050.1entrez:828175Gene3D:4.10.280.10GeneID:828175
Genevisible:Q8GZ38GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009506
GO:GO:0009567Gramene:AT4G00050.1hmmpanther:PTHR12565hmmpanther:PTHR12565:SF173HOGENOM:HOG000084918InParanoid:Q8GZ38IntAct:Q8GZ38
InterPro:IPR011598KEGG:ath:AT4G00050ncoils:CoilOMA:ACQSQPIPaxDb:Q8GZ38Pfam:PF00010Pfam:Q8GZ38
Pfscan:PS50888PhylomeDB:Q8GZ38PIR:T01333PRO:PR:Q8GZ38PROSITE:PS50888ProteinModelPortal:Q8GZ38Proteomes:UP000006548
RefSeq:NP_191916.3SMART:SM00353SMR:Q8GZ38STRING:3702.AT4G00050.1SUPFAM:SSF47459TAIR:AT4G00050tair10-symbols:UNE10
UniGene:At.44779UniProt:Q8GZ38
Coordinates (TAIR10) chr4:+:17863..19848
Molecular Weight (calculated) 43367.80 Da
IEP (calculated) 7.55
GRAVY (calculated) -0.56
Length 399 amino acids
Sequence (TAIR10)
(BLAST)
001: MSQCVPNCHI DDTPAAATTT VRSTTAADIP ILDYEVAELT WENGQLGLHG LGPPRVTASS TKYSTGAGGT LESIVDQATR LPNPKPTDEL VPWFHHRSSR
101: AAMAMDALVP CSNLVHEQQS KPGGVGSTRV GSCSDGRTMG GGKRARVAPE WSGGGSQRLT MDTYDVGFTS TSMGSHDNTI DDHDSVCHSR PQMEDEEEKK
201: AGGKSSVSTK RSRAAAIHNQ SERKRRDKIN QRMKTLQKLV PNSSKTDKAS MLDEVIEYLK QLQAQVSMMS RMNMPSMMLP MAMQQQQQLQ MSLMSNPMGL
301: GMGMGMPGLG LLDLNSMNRA AASAPNIHAN MMPNPFLPMN CPSWDASSND SRFQSPLIPD PMSAFLACST QPTTMEAYSR MATLYQQMQQ QLPPPSNPK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)