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AT3G66652.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : fip1 motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
fip1 motif-containing protein; CONTAINS InterPro DOMAIN/s: Fip1 (InterPro:IPR007854); BEST Arabidopsis thaliana protein match is: homolog of yeast FIP1 [V] (TAIR:AT5G58040.1); Has 1059 Blast hits to 916 proteins in 236 species: Archae - 0; Bacteria - 82; Metazoa - 441; Fungi - 209; Plants - 110; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Protein Annotations
BioGrid:5181eggNOG:ENOG410XQB4eggNOG:KOG0882EMBL:AC020580EMBL:AC036106EMBL:CP002686EnsemblPlants:AT3G66652
EnsemblPlants:AT3G66652.1EnsemblPlants:AT3G66652.2entrez:819846GeneID:819846Genevisible:F4JC20GO:GO:0003723GO:GO:0005634
GO:GO:0006397Gramene:AT3G66652.1Gramene:AT3G66652.2hmmpanther:PTHR13484hmmpanther:PTHR13484:SF0HOGENOM:HOG000215115IntAct:F4JC20
InterPro:IPR007854iPTMnet:F4JC20KEGG:ath:AT3G66652ncoils:CoilOMA:RKRRWCAPaxDb:F4JC20Pfam:F4JC20
Pfam:PF05182PRIDE:F4JC20PRO:PR:F4JC20Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72187Reactome:R-ATH-77595
RefSeq:NP_001189830.1RefSeq:NP_187318.2STRING:3702.AT3G66652.1TAIR:AT3G66652UniGene:At.54050UniProt:F4JC20
Coordinates (TAIR10) chr3:+:2084030..2087556
Molecular Weight (calculated) 115376.00 Da
IEP (calculated) 5.90
GRAVY (calculated) -1.27
Length 997 amino acids
Sequence (TAIR10)
(BLAST)
001: MDSTDDDFGD LYVDDAKFQA TDAFESECAT NSGEDKGFEE TVKSDSEGEV KKFDVVAKDS SPCDDDDCAM NLTEADEESE FSDSDDDLNI VLKDDDSKAL
101: PASCVFNTNF GGYEASKASS FQRRWTRNAS ANNACIDPSL GMSQYRYSFP NPWSRTPFDV NLDVLEKKPW RDPGTDTSDF FNFGLNEQSW KDYCKPLGRA
201: IEVRGGTLER IPSADLRRPR DPDPGVVIQI PVTNDVEELP VRTPEKARCI TSNEASRSDV SHSYGSKDLN SVYGSPKDEA FVGCQEENAG SFSGEKSLPT
301: ENCCSREATP SDKEMLEKEK EESVCNSDET DPSSVERESS LGDRIRLSPT SSSSVGINEE SDDYETESLK DSATDDQREV STPPQEARLA EHEAISIKRG
401: EDSGTMHSRH RRSHEDSSKR HCGRAGYARY VKDASPTPDP GRGKKVGSLQ GLYRDSNKNW QNGPPITLER DETEGKGVHY YREKSHGRLN SSVDHDRHRE
501: HRFGWRNNKE SSLGRGFDHS NSYKCGTHLK EYTSRSSFDL NQRNSRSSFK EEDDRYGWHH RERKYVHERS PIRAYENYKE RNGCDWLREP YYEDCIPITD
601: MDYRYRSENS SAHAIHNLKH SPENDLYCRR RGGYDYNLHR DRYEDGVHRV ESRIPFELAY REMRSFAEVE MREYQGYKRH EEFSEIEKRH HYIHDWHLDR
701: FVSEEDGYKY RIQDGWSSPS LSLRDSWYTK EAKGDFRRDD TRDFRTPEAY DSQNNHFHKA APRDGWTQNL GRSHNVSVKD RLQYDADWVG PDRGRYNMAD
801: DMQCSMREVS NSEHPSYTDE IFVRDIRVPT HNRMATKQRF GYLQSHIHEN DERHHRSKKL RGDGHAFIKR QDHVDLAGRQ GKVSNQSKKR FSNGGDTIEQ
901: QDVQKPRKLM GKSEEKAMQN RDINDKEEGE IIEEVKGVEI DNERIQESLK KMEKRRERFK GTKLAVEATF KSQTELRAKA DVTNQQRPVR KRRWCAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)