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AT3G63520.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21433285 (2011): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : carotenoid cleavage dioxygenase 1
Curator
Summary (TAIR10)
Encodes a protein with 9-<i>cis</i>-epoxycarotenoid dioxygenase activity. The enzyme was shown to act on a variety of carotenoid including &#946;-carotene, lutein, zeaxanthin, and all-<i>trans</i>-violaxanthin. When those compounds are used as substrates, the major reaction product detected is a C14 dialdehyde: 4,9-dimethyldodeca-2,4,6,8,10-pentaene-1,12-dial. The enzyme did not cleave as efficiently carotenoids containing 9-<i>cis</i>-double or allenic bonds.
Computational
Description (TAIR10)
carotenoid cleavage dioxygenase 1 (CCD1); FUNCTIONS IN: 9-cis-epoxycarotenoid dioxygenase activity; INVOLVED IN: response to water deprivation, carotene catabolic process, xanthophyll catabolic process, carotenoid catabolic process; LOCATED IN: plasma membrane, vacuole, cytoplasm; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 4 (TAIR:AT4G19170.1); Has 2926 Blast hits to 2896 proteins in 500 species: Archae - 16; Bacteria - 808; Metazoa - 317; Fungi - 194; Plants - 866; Viruses - 0; Other Eukaryotes - 725 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT3G63520-MONOMEREC:1.14.99.n4eggNOG:COG3670eggNOG:KOG1285EMBL:AJ005813EMBL:AL163818EMBL:BT000436
EMBL:BT002102EMBL:CP002686EnsemblPlants:AT3G63520EnsemblPlants:AT3G63520.1entrez:825527GeneID:825527Genevisible:O65572
GO:GO:0005737GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0005886GO:GO:0009506GO:GO:0016118
GO:GO:0016121GO:GO:0016124GO:GO:0045549GO:GO:0046872Gramene:AT3G63520.1gramene_pathway:1.13.11.51gramene_pathway:PWY-695
gramene_plant_reactome:1119374gramene_plant_reactome:6873740hmmpanther:PTHR10543hmmpanther:PTHR10543:SF37HOGENOM:HOG000254836InterPro:IPR004294KEGG:ath:AT3G63520
KO:K11159OMA:IASAQMNPANTHER:PTHR10543PaxDb:O65572Pfam:O65572Pfam:PF03055PhylomeDB:O65572
PIR:T49193PIR:T51734PRIDE:O65572PRO:PR:O65572ProteinModelPortal:O65572Proteomes:UP000006548RefSeq:NP_191911.1
SMR:O65572STRING:3702.AT3G63520.1TAIR:AT3G63520tair10-symbols:ATCCD1tair10-symbols:ATNCED1tair10-symbols:CCD1tair10-symbols:NCED1
UniGene:At.22615UniGene:At.43820UniProt:O65572
Coordinates (TAIR10) chr3:+:23452940..23455896
Molecular Weight (calculated) 60911.50 Da
IEP (calculated) 6.47
GRAVY (calculated) -0.25
Length 538 amino acids
Sequence (TAIR10)
(BLAST)
001: MAEKLSDGSS IISVHPRPSK GFSSKLLDLL ERLVVKLMHD ASLPLHYLSG NFAPIRDETP PVKDLPVHGF LPECLNGEFV RVGPNPKFDA VAGYHWFDGD
101: GMIHGVRIKD GKATYVSRYV KTSRLKQEEF FGAAKFMKIG DLKGFFGLLM VNVQQLRTKL KILDNTYGNG TANTALVYHH GKLLALQEAD KPYVIKVLED
201: GDLQTLGIID YDKRLTHSFT AHPKVDPVTG EMFTFGYSHT PPYLTYRVIS KDGIMHDPVP ITISEPIMMH DFAITETYAI FMDLPMHFRP KEMVKEKKMI
301: YSFDPTKKAR FGVLPRYAKD ELMIRWFELP NCFIFHNANA WEEEDEVVLI TCRLENPDLD MVSGKVKEKL ENFGNELYEM RFNMKTGSAS QKKLSASAVD
401: FPRINECYTG KKQRYVYGTI LDSIAKVTGI IKFDLHAEAE TGKRMLEVGG NIKGIYDLGE GRYGSEAIYV PRETAEEDDG YLIFFVHDEN TGKSCVTVID
501: AKTMSAEPVA VVELPHRVPY GFHALFVTEE QLQEQTLI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)