AT3G63510.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.998 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FMN-linked oxidoreductases superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:23450542..23452682 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46377.60 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.56 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||
| Length | 419 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MLVPNKRFHY LLQFQMWCLP SVRPNVSEMF FKSPMLKPTA RFSSTSSPYL PPSFSVAPMM DWTDNHYRTL ARLITKHAWL YTEMIAAETL VHQQTNLDRF 101: LAFSPQQHPI VLQLGGSNVE NLAKAAKLSD AYGYDEINLN CGCPSPKVAG HGCFGVSLML KPKLVGEAMS AIAANTNVPV TVKCRIGVDN HDSYDELCDF 201: IYKVSTLSPT RHFIVHSRKA LLGGISPADN RRIPPLKYEY YYALVRDFPD LRFTINGGIT SVSKVNAALK EGAHGVMVGR AAYNNPWQTL GQVDTAVYGV 301: PSSGLTRRQV LEQYQVYGDS VLGTHGNGRP NVRDLVKPLL NLFHSENGNS LWKRRADAAF KECRSVGSLL EESLRAIPDC VLDSPISGSP ESGDEDVFAD 401: VHNVLPPPYE AGEEIILCA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)