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AT3G63510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FMN-linked oxidoreductases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FMN-linked oxidoreductases superfamily protein; FUNCTIONS IN: tRNA dihydrouridine synthase activity, FAD binding, catalytic activity; INVOLVED IN: regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), tRNA-dihydrouridine synthase (InterPro:IPR001269); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT5G47970.2); Has 11920 Blast hits to 11916 proteins in 2583 species: Archae - 58; Bacteria - 8071; Metazoa - 278; Fungi - 218; Plants - 160; Viruses - 0; Other Eukaryotes - 3135 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0042eggNOG:KOG2335EMBL:BT000879EMBL:CP002686EnsemblPlants:AT3G63510EnsemblPlants:AT3G63510.1entrez:825526
ExpressionAtlas:Q8H128Gene3D:3.20.20.70GeneID:825526GO:GO:0017150GO:GO:0050660Gramene:AT3G63510.1hmmpanther:PTHR11082
hmmpanther:PTHR11082:SF29HOGENOM:HOG000259834InterPro:IPR001269InterPro:IPR013785OMA:YGPSRPNPANTHER:PTHR11082Pfam:PF01207
PhylomeDB:Q8H128Proteomes:UP000006548RefSeq:NP_567149.2SMR:Q8H128STRING:3702.AT3G63510.1SUPFAM:SSF51395TAIR:AT3G63510
UniGene:At.43820UniProt:Q8H128
Coordinates (TAIR10) chr3:+:23450542..23452682
Molecular Weight (calculated) 46377.60 Da
IEP (calculated) 7.56
GRAVY (calculated) -0.17
Length 419 amino acids
Sequence (TAIR10)
(BLAST)
001: MLVPNKRFHY LLQFQMWCLP SVRPNVSEMF FKSPMLKPTA RFSSTSSPYL PPSFSVAPMM DWTDNHYRTL ARLITKHAWL YTEMIAAETL VHQQTNLDRF
101: LAFSPQQHPI VLQLGGSNVE NLAKAAKLSD AYGYDEINLN CGCPSPKVAG HGCFGVSLML KPKLVGEAMS AIAANTNVPV TVKCRIGVDN HDSYDELCDF
201: IYKVSTLSPT RHFIVHSRKA LLGGISPADN RRIPPLKYEY YYALVRDFPD LRFTINGGIT SVSKVNAALK EGAHGVMVGR AAYNNPWQTL GQVDTAVYGV
301: PSSGLTRRQV LEQYQVYGDS VLGTHGNGRP NVRDLVKPLL NLFHSENGNS LWKRRADAAF KECRSVGSLL EESLRAIPDC VLDSPISGSP ESGDEDVFAD
401: VHNVLPPPYE AGEEIILCA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)