AT3G63500.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1423) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function (DUF1423); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1423) (TAIR:AT1G14740.1); Has 795 Blast hits to 695 proteins in 144 species: Archae - 6; Bacteria - 39; Metazoa - 207; Fungi - 61; Plants - 263; Viruses - 0; Other Eukaryotes - 219 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:23446331..23449166 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 99790.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.52 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||
| Length | 887 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: METTDSMTDK KSVEDAENVP EHATESMHVS QNNVNDTSTA LAIEHDHRDG TITASANKIT DTVDEKGDKD EDYKENLHGV KLEETLYPDV PERLEELKEV 101: KGNDGDANKA EVEGPECVEE NALANRTPAE YISSVSDSSV HKCKDKGKNS DVPLTHLVGN ALFSESKTED LHDKDKDEKD DNFGGPSIRG FELFSSSPVR 201: RAKKTEQSGV NKHKDEKLLL EPLDLSLSLP DVLLPIGGQD TNQLGSPVRS GSVRSLTDTF CTNSDGFTMS MSFSGSRSFN HNPSCSLSHN IGDNEQSVHS 301: RPIFQGIDWQ ALSHNDSKYN ENTVYQRLME NGNGSVQPRA MKGNLISGQA DEEHLRLPDG SSKAANILEK QLSFQKSVDV RSACPRTGSL ENGSKFTVEK 401: KTAKDFYSGS NSWITGLEAG GHDFVETVIR YILSDSMPVM TKRFHEMPTR NITSLKENIR QMMLNMDKNV QLGAFQDALQ NRTDITLELL TKSHRAQLEI 501: LVALKSGRSD FLLLDNSISS SHLAEIFMNM RCKNLSCRVL LPVDECDCRV CSRKDGFCSA CMCLVCSNFD MASNTCSWVG CDVCLHWCHT DCGIKESYIR 601: NGINASGAPG MTEMQFHCVA CNHPSEMFGF VKEVFLNFAR EWKFERFCKE LEYVNKIFSS SKDSRGKQLR QAADAMLASL KSKLIGLPEA CNRILGFISD 701: CDSSTPAETS APFIYEQPKP RHERGSPSQD TAWLRSVCSD NPHNQLKRSA SVADAFHRER QVEICAVEME LERGSPKEPR FEELESIVRM KQAEAEMFQG 801: RADDARREAE GLKRIAIAKK EKIEEEYNRR MGKLSMEDAQ ERRRRRYEEL EAMQRGQREF YEMKMRMEEE MRGLLTKMEM TKQSLAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)