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AT3G63470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : serine carboxypeptidase-like 40
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
serine carboxypeptidase-like 40 (scpl40); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563), Peptidase S10, serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 39 (TAIR:AT3G52020.1); Has 3527 Blast hits to 3467 proteins in 341 species: Archae - 0; Bacteria - 144; Metazoa - 641; Fungi - 871; Plants - 1469; Viruses - 0; Other Eukaryotes - 402 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G63470-MONOMEREC:3.4.16.-eggNOG:COG2939eggNOG:KOG1282
EMBL:AK228170EMBL:AL163818EMBL:AY087589EMBL:BT003126
EMBL:CP002686EnsemblPlants:AT3G63470EnsemblPlants:AT3G63470.1entrez:825522
ESTHER:arath-SCP40Gene3D:3.40.50.1820GeneID:825522Genevisible:Q0WRX3
GO:GO:0004185GO:GO:0005576GO:GO:0051603Gramene:AT3G63470.1
hmmpanther:PTHR11802hmmpanther:PTHR11802:SF66HOGENOM:HOG000198295InParanoid:Q0WRX3
InterPro:IPR001563InterPro:IPR018202InterPro:IPR029058InterPro:IPR033124
KEGG:ath:AT3G63470KO:K16297MEROPS:S10.A41OMA:MTEECAV
PANTHER:PTHR11802PaxDb:Q0WRX3Pfam:PF00450Pfam:Q0WRX3
PhylomeDB:Q0WRX3PIR:T49188PRIDE:Q0WRX3PRINTS:PR00724
PRO:PR:Q0WRX3PROSITE:PS00131PROSITE:PS00560ProteinModelPortal:Q0WRX3
Proteomes:UP000006548RefSeq:NP_191906.1scanprosite:PS00131scanprosite:PS00560
SMR:Q0WRX3STRING:3702.AT3G63470.1SUPFAM:SSF53474TAIR:AT3G63470
tair10-symbols:scpl40TMHMM:TMhelixUniGene:At.33917UniGene:At.71216
UniProt:Q0WRX3
Coordinates (TAIR10) chr3:+:23438561..23440862
Molecular Weight (calculated) 56242.70 Da
IEP (calculated) 8.48
GRAVY (calculated) -0.30
Length 502 amino acids
Sequence (TAIR10)
(BLAST)
001: MRKGQGYSYS VIASVLVLLC VVVSRIECSS QVHALSRLYL SKRGVGGSST MDTSHFKAVK DLKPSSLRSA ANQEGLRKRD LIRRLPGQPP VSFDQYGGYV
101: TVNESAGRSF FYYFVEASKS KDSSPLLLWL NGGPGCSSLA YGALQELGPF RVHSDGKTLF RNRYAWNNAA NVLFLESPAG VGFSYTNTTS DLEKHGDRNT
201: AADNYIFLVN WLERFPEYKG RDLYIAGESY AGHYVPQLAH TILLHHRSFF NLKGILIGNA VINDETDLMG MYDFFESHAL ISEDSLARLK SNCDLKTESA
301: SVMTEECAVV SDQIDMDTYY LDIYNIYAPL CLNSTLTRRP KRGTTIREFD PCSDHYVQAY LNRPEVQAAL HANATKLPYE WQPCSSVIKK WNDSPTTVIP
401: LIKELMGQGV RVWVFSGDTD GRIPVTSTKY SLKKMNLTAK TAWHPWYLGG EVGGYTEEYK GKLTFATVRG AGHQVPSFQP KRSLSLFIHF LNDTPLPDTS
501: RY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)