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AT3G63400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding, RNA splicing; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type, conserved site (InterPro:IPR020892); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT2G21130.1); Has 55912 Blast hits to 37431 proteins in 3034 species: Archae - 126; Bacteria - 11048; Metazoa - 23197; Fungi - 5408; Plants - 3603; Viruses - 370; Other Eukaryotes - 12160 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G63400-MONOMERBioCyc:ARA:GQT-1242-MONOMERBioGrid:10829EC:5.2.1.8eggNOG:COG0652eggNOG:KOG0865EMBL:AK319108
EMBL:AL163818EMBL:AY568527EMBL:BT000915EMBL:CP002686EnsemblPlants:AT3G63400EnsemblPlants:AT3G63400.1EnsemblPlants:AT3G63400.2
EnsemblPlants:AT3G63400.3entrez:825515ExpressionAtlas:Q9LY75Gene3D:2.40.100.10GeneID:825515Genevisible:Q9LY75GO:GO:0003755
GO:GO:0006457GO:GO:0008380GO:GO:0016607hmmpanther:PTHR11071hmmpanther:PTHR11071:SF297HOGENOM:HOG000065980InParanoid:Q9LY75
IntAct:Q9LY75InterPro:IPR002130InterPro:IPR020892InterPro:IPR024936InterPro:IPR029000iPTMnet:Q9LY75KEGG:ath:AT3G63400
OMA:NSNAEGRPANTHER:PTHR11071PaxDb:Q9LY75Pfam:PF00160Pfam:Q9LY75Pfscan:PS50072PhylomeDB:Q9LY75
PIR:T49181PRIDE:Q9LY75PRINTS:PR00153PRO:PR:Q9LY75PROSITE:PS00170PROSITE:PS50072ProteinModelPortal:Q9LY75
Proteomes:UP000006548RefSeq:NP_001190169.1RefSeq:NP_191899.1RefSeq:NP_850740.1scanprosite:PS00170SMR:Q9LY75STRING:3702.AT3G63400.1
SUPFAM:SSF50891TAIR:AT3G63400UniGene:At.48806UniGene:At.69648UniProt:Q9LY75
Coordinates (TAIR10) chr3:+:23412449..23415435
Molecular Weight (calculated) 63543.80 Da
IEP (calculated) 11.56
GRAVY (calculated) -1.36
Length 570 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKKKNPNVF LDVSIGGDPV QRIVIELFAD VVPKTAENFR ALCTGEAGVG KSTGKPLHFK GSSFHRVIKG FMAQGGDFSN GNGTGGESIY GGKFSDENFR
101: LDHDGAGVLS MANCGPNTNG SQFFILFKRQ PHLDGKHVVF GKVVEGMAVI KKMELVGTSD GKPTSPVKII DCGETSQIRA HDAAEREKGK SKKSNKNFSP
201: GDVSDREAKE TRKKESNEKR IKRKRRYSSS DSYSSSSDSD SDSESEAYSS SSYESSSSSD GKHRKRKSTT RHKGRRGERK SKGRSGKKKA RPDRKPSTNS
301: SSDTESSSSS DDEKVGHKAI KSVKVDNADQ HANLDDSVKS RSRSPIRRRN QNSRSKSPSR SPVRVLGNGN RSPSRSPVRD LGNGSRSPRE KPTEETVGKS
401: FRSPSPSGVP KRIRKGRGFT ERYSFARKYH TPSPERSPPR HWPDRRNFQD RNRDRYPSNR SYSERSPRGR FRSPPRRRSP PRYNRRRRST SRSPDGYRRR
501: LRDGSRSQSP RHRSRSQSPR KRQPISQDLK SRLGPQRSPI RGGRTSPAES LSPSHSPSPP GKRGLVSYAD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)